Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01371 ATGTTTCAAGGGTTTGTTTTTGGGATTAATGACGTGTACGGTCACGAATTCTCCGCCGTGTCACTGCCGGAACTCACTATCGGTAACTTAACGGAAAAAGTAGACGACACGGCGGTGTTCAGCTCCGACGAATTTCGGATGTACTCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCATGATTGGACGGAATGTCCGTATGCACACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCAGTTCAATTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCCGGGAGCTGCCCGAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTATTGGCTTCACCCGGCTCGGTACCGGACCCGGGCCTGTAATGCCGGCCGATTTTGTCAAAGGAAAGTTTGTTTTTTTGCTCACTCCCCGGAGGAACTTCGGCCAGAAACCAAACAGAAGTCTAATTTTAGTGCCCACCGGCAGCGTGTGGCGGTGGATGCCATTGAAAGTCCGCCGGAGGAAAAGAGCGACGGAATTTTGGAAATCCCAGCGAGGGTGAGCGGCAGCGGACGGAAAAATGAACGGAGTTTTGGATTGGATGTGACGGAATTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGAACAACAAGGGGGCTGTTAATTTTGGAGCTTCCCATGGTAATAACTTGACAAAGATCAAGTCCTTATGCTTGGAGGTCAAAGAACCCTTTAGATATGGAAGTTTTGAGCCTATTCTTTTGGTATTCTCAAGCAACTCTCTAGCTGTTCGAATTCTATATCCTATTTTCTGGGGTCTATTGAACCTGCTAAGTTCCTTAGCAGTGAACTTGTTTCCACATGTGATTTGGTGGAAGTTATATTCAGTAGCTGCATCACACTTGGAGGTATATATTGAAGCTAATGTACATAACTATAACGCTTTGATTGATGTACCTTTCTTCCACATGCTCAATGATCTCATAATAGAAAGCATTTGTGGTCGTCTTAAACCGCTTCTATATGCTGAAGGTGGAAAGACGAAGCATGCAGCCTCGATGTGCCAAATCCAAAATACATCACCAAGCACTTCTGTTACAAACATGTTTGCAAGTGGGAAAGCTCAAGCAAACTGTGTTATTACTCTTCAAATTGGCAAACATGCATGGGGAGCTGTAATCATTCAAGTTTCATGGTGTCGTTACTGGAATCAGTTACACAAAGAAAAATCAAACAATCGATGA 1245 45.86 MFQGFVFGINDVYGHEFSAVSLPELTIGNLTEKVDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSNFSAHRQRVAVDAIESPPEEKSDGILEIPARVSGSGRKNERSFGLDVTELELPHIEWISELLNNKGAVNFGASHGNNLTKIKSLCLEVKEPFRYGSFEPILLVFSSNSLAVRILYPIFWGLLNLLSSLAVNLFPHVIWWKLYSVAASHLEVYIEANVHNYNALIDVPFFHMLNDLIIESICGRLKPLLYAEGGKTKHAASMCQIQNTSPSTSVTNMFASGKAQANCVITLQIGKHAWGAVIIQVSWCRYWNQLHKEKSNNR* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18326465 18332528 + Chy7G142010.1 Chy07g01371 231382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01371 414 Gene3D - 79 157 - -
Chy07g01371 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 34 162 - -
Chy07g01371 414 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Chy07g01371 414 SMART c3hfinal6 119 142 IPR000571 GO:0046872
Chy07g01371 414 PANTHER UNKEMPT FAMILY MEMBER 34 162 IPR045234 -
Chy07g01371 414 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 109 IPR000571 GO:0046872
Chy07g01371 414 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01371 Chy-Chr7:18326465 Chy10g00408 Chy-Chr10:9756104 6.61E-49 dispersed
Chy07g01371 Chy-Chr7:18326465 Chy07g00223 Chy-Chr7:1831517 6.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18356 PF00642 zf-CCCH 2.80E-05 CL0537 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01371 - - mcha:111011570 305.834