Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01391 ATGGCTAATTCCCGACCTCTTCCTCATCGCAGTGGAGCAGGTATAGTCAAAAGTATCCGTTTAGAGAACTTCATGTGTCACAGCAATTTGTATATTCAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAATGGAAGTGGTAAGAGTGCTATTTTGACTGCTTTGTGTGTTGCATTTGGCTGTCGAGCTAAAGGGACCCAAAGGGCAGCTACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGTATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGAGACGTTATAATCATCGAAAGAAGGATTTCTGAATCCACTAGTGCCATTGTTTTGAAGGATTGTCAAGGAAAAAAGGTTGCCAGCCGAAGGGATGAACTACGAGAGCTAGTAGAGCATTTTAACATAGATGTTGAGAATCCATGTGTAATAATGAGTCAAGACAAAAGTAGAGAGTTCCTGCATTCTGGAAACGACAAAGACAAATTTAAGTTCTTTTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATCTGCTGAAAAATATTTTTGATCATTTGAGATCTGCTAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTGAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCAAGTAGAAGAAATCTCTCAACAAGTTCAACAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAGCTGGGTCTGGTGGAAAAATTAAGAGAACGCTATATCGAGAAAAAAACCCAAATTGCTAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGAAACTCTTACCTTGGCAACAAGAGAGAAGCTCGGACTTGAAGAGGAGCATGGTCGTAAAATAAACTACATCCAAAAGCTGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAAAAATACCCAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGATTCGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCCTTGATGGAAAGTCTGTACAGTGGGAGAAATGATATAAAAAAGATTGCCGAAGAGATTGCAAGTTACGAGAAAAAAGCCTATGAATTTTCTCACTCAATTCAAGAGCTCAAGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGACAAAGTCATTCAATTATTACGTGCAATTGAGAGACACCATCGAAGGTTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAATTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTGTCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCATCCTACAACCCTTTCTGTCATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATAATGTGGGTAAATCAGTTGCATTTGACCAACGGATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCACGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAAGCCCAGAAGTGGCAGACTTTGTAGCTCCTTTGACGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAACAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAACAATGCGAAGAGGAGGTGTCGGAGTGCAGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGAAAGTCACAAGTTGCTGAAACTAGTTCAGTACCTTCATCAAATGTGGATGAGCTACACCAAGAAATTTCTAAAATTGAAGAGGAGATACAAGAGAATAAGATGCTTCTTGAAAAATTTAGAGTTAGGATGAACGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAAAATCTGTGTGAGTCGGCAAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGCTTGAAAGAAAATTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAATAAGGTCCTTTTTGATATTAAAGAGGCAGAGAGACAACATCAGGAGCTTGAGCGTCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAACGAGGCTAAATCAGAGACTTAATAATGAGACCAGAAGATGTTCTGAATCTTTGGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGCACAATTATAAGAAAACGACAGACTTATAAAAGTTTTAGAGAGAAGTTGGAT 2691 39.65 MANSRPLPHRSGAGIVKSIRLENFMCHSNLYIQFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRAATLKDFIKTGCSHAVIHVVLQNNGEDAFKHGIYGDVIIIERRISESTSAIVLKDCQGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDHLRSANALVDDLESTIRPVEKELNELRGKIKNMEQVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLVEKLRERYIEKKTQIASMMERTSEVRRMKDELQETLTLATREKLGLEEEHGRKINYIQKLAKRVRLLEQQVQDIHEQHIKNTQAEESEIEEKLKELDSETEAAKSTVMRLKEEENALMESLYSGRNDIKKIAEEIASYEKKAYEFSHSIQELKQHQTNKVTAFGGDKVIQLLRAIERHHRRFKKPPIGPIGSHLNLVNGDMWAPAVEIAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIVIYDFSRPVLNIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYNVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRKPRSGRLCSSFDDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLNNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSVPSSNVDELHQEISKIEEEIQENKMLLEKFRVRMNEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLQLERKLHSAEKEKDHYEGIMTNKVLFDIKEAERQHQELERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKRQTYKSFREKLD 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18523184 18539219 + Chy7G142210.1 Chy07g01391 231402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01391 897 Coils Coil 850 870 - -
Chy07g01391 897 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 9 896 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Chy07g01391 897 Coils Coil 710 793 - -
Chy07g01391 897 Pfam AAA domain 18 244 IPR038729 GO:0140664
Chy07g01391 897 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 896 - -
Chy07g01391 897 Gene3D - 628 800 - -
Chy07g01391 897 Coils Coil 203 243 - -
Chy07g01391 897 SUPERFAMILY Smc hinge domain 423 611 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Chy07g01391 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 294 IPR027417 -
Chy07g01391 897 Coils Coil 635 683 - -
Chy07g01391 897 Coils Coil 802 822 - -
Chy07g01391 897 Gene3D - 16 266 IPR027417 -
Chy07g01391 897 Coils Coil 362 396 - -
Chy07g01391 897 Coils Coil 340 360 - -
Chy07g01391 897 CDD ABC_SMC6_euk 16 168 - -
Chy07g01391 897 Coils Coil 284 304 - -
Chy07g01391 897 Coils Coil 312 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01391 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1699.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01830 Chy-Chr1:23776959 Chy07g01391 Chy-Chr7:18523184 5.32E-16 dispersed
Chy06g00848 Chy-Chr6:6099475 Chy07g01391 Chy-Chr7:18523184 7.79E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01603 Cam07g1696 Cec07g1792 Cco07g1756 Clacu07g1680 Cmu07g1646 Cre07g2019 . . Chy07g01391 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01830 . 4 1033 Structural Maintenance of Chromosomes family AT5G15920 68.3 0.0e+00 1364.4
Chy07g01391 . 10 896 Structural Maintenance of Chromosomes family AT5G07660 61.0 3.4e-294 1008.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G07660 79.5 1.7e-67 255.0
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G07660 72.0 1.6e-54 211.8
Chy07g01391 . 7 896 Structural Maintenance of Chromosomes family AT5G61460 63.7 7.1e-313 1070.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G61460 84.6 8.5e-72 269.2
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G61460 76.2 1.2e-57 222.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32