Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01392 GCTTGCAAGAAAGCTCTTCAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAGGATGCATCCAGCAGTTCTGTTCGTGATACTCGTGGACTTTCAGGTGGAGAACGATCATTTTCAACTCTATGCTTTGCTTTGGCATTGCACGAGATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACGCCTCATGACATCGGGGTGGTAAAACAAGGAGAAAGAATCAAGAAGCAACAAATGGCAGCTCCTCGATCGTGA 468 43.38 ACKKALQLRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18541073 18542391 + Chy7G142220.1 Chy07g01392 231403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01392 155 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 1 155 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Chy07g01392 155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 146 IPR027417 -
Chy07g01392 155 Gene3D - 2 151 IPR027417 -
Chy07g01392 155 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 155 - -
Chy07g01392 155 CDD ABC_SMC6_euk 59 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01392 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 306.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00988 Chy-Chr4:14524124 Chy07g01392 Chy-Chr7:18541073 1.93E-86 dispersed
Chy07g01392 Chy-Chr7:18541073 Chy08g00049 Chy-Chr8:1775008 5.95E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01392 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01830 . 4 1033 Structural Maintenance of Chromosomes family AT5G15920 68.3 0.0e+00 1364.4
Chy07g01391 . 10 896 Structural Maintenance of Chromosomes family AT5G07660 61.0 3.4e-294 1008.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G07660 79.5 1.7e-67 255.0
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G07660 72.0 1.6e-54 211.8
Chy07g01391 . 7 896 Structural Maintenance of Chromosomes family AT5G61460 63.7 7.1e-313 1070.1
Chy07g01392 . 1 156 Structural Maintenance of Chromosomes family AT5G61460 84.6 8.5e-72 269.2
Chy04g00988 . 24 166 Structural Maintenance of Chromosomes family AT5G61460 76.2 1.2e-57 222.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015922 0 4 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6