Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01408 ATGTCCTCCGCCCATGGTGGCGCCACCGCCTCTGGTGGTGGTCTCACTCGCTACGGTTCCGCCCCTGGATCTTTCCTGACAACAGCAGTCGATTCCGTGATTGGAACTCGTCAACCGGACTCCGCCGCCACCCTCCGTGCCCCGCCCTCCTTTGGCGCCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTCGAATCCTCAAGGAAAGTTGTTCAGTCCTCCTCTACTTCCAACGATCTAAAATCGTCGTCGTCCACCGCCACCGCCGCTGCCTTGAATCGGTCGTACGGATTCAACGATTTGGCGTTGGGGGATTTCTCGACGGGTAGAAACTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCTCCGTTGGTTCGCCAGAGAAGCTCTCCAGCTGGATTTCTCGGCCATCTCTCCGTCGCCGAACCAAACGGTGGGTTTTCATTGACAATGGGGGGAGGTGGAGGTGGAAATGGAGGAGGAAGATTAAAGAGTCAAATGAGTTTCAATGGGCAAGATAACTCACTTTCTCAAATCTCAGAAATTAGTGAAAGTTTTGTAGAGGCAGCCAATTCTTGTAGCAATGGCCTTCAAAGCAACACCAATTCAACACACTCCTTTGCTCCTTCTTCTGCCTTTGCTATGGATTCTTCTTGGGACACTTCTAGTAACTCCATTGTCTTTGCTGCTCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCTGACTTCTTCACCGGCCTCGAGTCTCAATTTAGCTTGCCACAAACGACTCTAGAAATGGCAGCTGTGGAGAGGCTGCTACAAATTCCTGAAGACTCCGTTCCTTGTAAGATTCGAGCCAAGCGTGGTTGTGCTACTCATCCTCGAAGTATCGCCGAACGGGAGAGGAGAACTAGAATCAGTGGAAAATTAAAAAAGCTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGTTATTCAGACATGTTAGACTTAGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAGGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA 1077 49.12 MSSAHGGATASGGGLTRYGSAPGSFLTTAVDSVIGTRQPDSAATLRAPPSFGAHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSTATAAALNRSYGFNDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTMGGGGGGNGGGRLKSQMSFNGQDNSLSQISEISESFVEAANSCSNGLQSNTNSTHSFAPSSAFAMDSSWDTSSNSIVFAAPHAKRSKHHSDADFFTGLESQFSLPQTTLEMAAVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18613667 18618930 + Chy7G142380.1 Chy07g01408 231419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01408 358 SMART finulus 292 342 IPR011598 GO:0046983
Chy07g01408 358 Coils Coil 326 353 - -
Chy07g01408 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 336 IPR011598 GO:0046983
Chy07g01408 358 PANTHER TRANSCRIPTION FACTOR BHLH129 14 351 - -
Chy07g01408 358 CDD bHLH_AtbHLH_like 291 343 IPR045239 -
Chy07g01408 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 350 IPR036638 GO:0046983
Chy07g01408 358 MobiDBLite consensus disorder prediction 1 21 - -
Chy07g01408 358 Pfam Helix-loop-helix DNA-binding domain 291 337 IPR011598 GO:0046983
Chy07g01408 358 Gene3D - 287 355 IPR036638 GO:0046983
Chy07g01408 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01882 Chy-Chr1:24172294 Chy07g01408 Chy-Chr7:18613667 1.17E-35 dispersed
Chy04g01757 Chy-Chr4:23938696 Chy07g01408 Chy-Chr7:18613667 5.48E-44 dispersed
Chy07g01408 Chy-Chr7:18613667 Chy09g00009 Chy-Chr9:85430 2.39E-21 dispersed
Chy07g01408 Chy-Chr7:18613667 Chy02g01436 Chy-Chr2:11431459 2.69E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18359 PF00010 HLH 9.60E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01408 - - csv:101205392 607.06