Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01548 ATGGCTTCCATTTCCAAGCTTTCCACTCCCATCTCTTCTCCTACTTTATCTTCCTCTTTCAACCCTCGATCTTCCCTCTCCTCCAACTCCTTCCTTGCCTTCCGCCCTTCTGACTTCTTCACCAAGCTCTCCGCCTCGAGATTGTCCGTTCAGAGAGGCTACGATTTGAAGGGCTCCTTGTTTGTTAGGTGTTCCCAGGGTGATGGCAATGGAATCCCAGTGAAGAGAACAGTGCTTCATGATCTCTATGAAAAGGAAGGACAGTCCCCATGGTACGATAATCTCTGCCGCCCTGTCACCGATCTGCTCCCTCTTATTTCTAAGGGTGTCAGAGGTGTAACTAGCAACCCAGCAATTTTCCAGAAAGCAATTTCGTCTTCAAATGCTTACAACGACCAATTCAGAGAACTCGTTCAATCGGGAAAAGATATTGAAAGTGCATATTGGGAGCTTGTGGTGAAGGATATTCAAGATGCATGCAAACTTTTTGAGCCTATCTATGATCAAACAGATGCTGGTGATGGCTACGTTTCAGTCGAAGTGTCTCCAAAGCTTGCTGATGATACTGAAGGAACCGTTGAGGCTGCAAAGTGGCTCCACAAAGTCGTTAGCCGCCCCAATGTGTACATCAAGATCCCTGCTACTGCTGCTTGCATCCCATCAATTAGGGATACTATTGCAAATGGCATAAGTGTCAATGTGACTCTCATATTCTCCATTGCTCGATATGAGGCAGTCATTGATGCTTACTTGGATGGGCTTGAAGCTTCAGGTCTCAGCGACCTTTCTAGAGTCACAAGTGTTGCTTCCTTCTTTGTAAGTCGAGTCGACACCCTTATCGACAAATTGCTTGAGAAAATTGGAACCCCAGAGGCCCTTGATCTGCGAGGAAAGGCTGCAGTCGCTCAAGCTGCCCTTGCTTATCAGCTCTACCAGAAGAAGTTTTCAGGCCCAAGATGGGAGGCTCTAGTGAAGAAGGGTGCAAAGAAGCAAAGGTTGCTCTGGGCATCTACAAGTGTTAAGAACCCGGCATACCCCGACACTTTATACGTTGCCCCACTCATTGGACCTGACACTGTTTCAACCATGCCTGACCAAGCTCTTGAGGCATTTGTTGACCACGGAACCGTTTCAAGGACTATCGATTCAAACGTGTCCGAGGCGGAAGGAATATACAGTGCACTCGAGAAGCTGGGAATAGACTGGAATGAAGTTGGGAATCAGCTTGAAGTTGAAGGAGTGGATTCTTTCAAGAAGAGCTTTGACAGCCTGCTTAATACTCTCCAAGACAAGGGCAACTCTCTTAGATTGGTAAGCCATTAA 1323 47.01 MASISKLSTPISSPTLSSSFNPRSSLSSNSFLAFRPSDFFTKLSASRLSVQRGYDLKGSLFVRCSQGDGNGIPVKRTVLHDLYEKEGQSPWYDNLCRPVTDLLPLISKGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIESAYWELVVKDIQDACKLFEPIYDQTDAGDGYVSVEVSPKLADDTEGTVEAAKWLHKVVSRPNVYIKIPATAACIPSIRDTIANGISVNVTLIFSIARYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKLLEKIGTPEALDLRGKAAVAQAALAYQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALEAFVDHGTVSRTIDSNVSEAEGIYSALEKLGIDWNEVGNQLEVEGVDSFKKSFDSLLNTLQDKGNSLRLVSH* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19719167 19721953 - Chy7G143780.1 Chy07g01548 231559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01548 440 Hamap Transaldolase [tal]. 79 438 IPR004732 GO:0004801|GO:0005737|GO:0006098
Chy07g01548 440 Gene3D Aldolase class I 77 431 IPR013785 -
Chy07g01548 440 PIRSF Trnald_Bac_Plnt 68 440 IPR004732 GO:0004801|GO:0005737|GO:0006098
Chy07g01548 440 ProSitePatterns Transaldolase signature 1. 112 120 IPR018225 GO:0005975
Chy07g01548 440 PANTHER TRANSALDOLASE 1 440 IPR001585 GO:0005975
Chy07g01548 440 TIGRFAM tal_mycobact: transaldolase 89 426 IPR004732 GO:0004801|GO:0005737|GO:0006098
Chy07g01548 440 Pfam Transaldolase/Fructose-6-phosphate aldolase 105 427 IPR001585 GO:0005975
Chy07g01548 440 SUPERFAMILY Aldolase 85 431 - -
Chy07g01548 440 MobiDBLite consensus disorder prediction 1 22 - -
Chy07g01548 440 PANTHER BNAA08G02750D PROTEIN 1 440 - -
Chy07g01548 440 CDD Transaldolase_like 89 423 IPR004732 GO:0004801|GO:0005737|GO:0006098
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01548 K00616 E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2] - csv:101205302 812.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01548 Chy-Chr7:19719167 Chy02g02185 Chy-Chr2:26034961 4.00E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0644 Cone15ag0654 . . . . . . Blo02g00212 . . . Bpe14g00821 . . . . . . . . . . . Cpe03g01174 . . . . . . . . . . . . . . . . Chy07g01548 Cme07g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007870 1 1 0 0 1 1 2 1 1 1 2 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 36