Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01561 ATGGCAGTTCTCAAGCTCATCCTCACTCATGCTCGCCGCCATTCCTTTGCCAAACCTCCTTCTCTTTCAACTCCCCACTTCCTTCACTTTCGAAGATCACTCTCTTCCTCTCAATCTGATTCTAACCCAGATCCCGATTCTCCCCCTGATCAATCCTCTCCAAGAACCTCTCGTTCCGTTCCCATTCAGCCAGTTTCCTACGCCGTCAAGCCCAAGCCACAAGCCGATGAGAACCAAGATTCCCCAGAAACGCTTCAATCTCCACCGCCTCCACAGGGGCCGCCGCCAAGGCCTGAAGGTCGGAGGACGTGGACTCGTGAGGATGTTCGATATATGAAGGATGCTCCAACTATAACTCCTGTTTCTTATGCGGCACGTGTTGCTCCGCTTCCGGAAGATACGGGTTCGGCTTCGGGTGGAGGAGAAGAGGGTGTGGTGACTGAGCAAATGGAGGAGGAAAGGAAGAAAATTGAGGCGGCGAATCAATGGAGGAGGAGGGTTTTGAGGGTTCCGGAGGAGGAGAAAGTTACTGCTCCATTTCCGATGCTGATCAAAGTCGAGAAGAAGGAACAGAAGGTAGTTCTTGATTTGATAGACGCTATCCGGCAAGTGAAGACTGCTGCCAAGGGAAATTTTGATGAGACTGTTGAAGCACATGCAAGGTTGGGGGTTGATGCTAGGAAAATGCAAGTTCTGGGTAACATGACTCTGCCCCATTCCATTGGGAAGACTGTCAAAGTGGCTTTCTTTGCTGAAGGGGCTGACGCTGAGGAAGCAAGGGCTGCTGGAGCTGATATTGTAGGTGGCGTTGAACTTATAGAGCAAATTGCAAGCAGTCGGAAATTCAATGCTGATAAGTGTTTCTCTACCCCTGAAATGATGAGGCGCATTGGCAAGATTTCCAAGATTTTGAGACAGCGTGGATTGCTACCAGATCCTAAACTAGGTACTGTGACCAGTGATATCAAAGGGGCCTTAAAGAAAGCAAGAGAAGGACACATGCATTTTAAAATGGATTCCACATCTATTGTGCATGTGGGGCTTGGGAAGGTGAGTCATTCGGAAGAGTTTTTACGAGAAAATATTGGTGCATTTGTGAATGCTCTTTTGCTTGCAAAGCCCGTTGGCTTGAAAAAAGCCTCAAAATATGCTGGATATTTAAATTCCTTCCACATATGTAGCACGATGGGTCCCGGATTCCCAATCACAATACAATCATTGTCCAAAGTTGCAGATCAATACAACAGAAAGTATGAATTACTTATTGGGAGAGTTGATGCCTTCTCTCTCTTTTGGAACTTTTGTGCTATGGATACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGAACTCCCGGAGCTCCGCTGTTTGGACGAGTGAAAGAAAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAAAGTTGCATCTCTTTCAATGTTGATGATAATTGGGGGAGTGAAGAAGGTGGCTTATCTAAAATAGTCTCTTCTTGTTCATTGCCATACCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCAGAGTTTATAGGCACTTTGATTCTCATATTTGCCGGAACTGCCACCGCCATTGTGAACCAAAAGACGGAAGGAACCGAAACGTTGATCGGCCTGGCGGCTTCCACCGGCCTTGCAGTGATGATCGTGATCTTGTCAACGGGTCACATCTCCGGAGCCCATCTGAATCCAGCTGTCACCATTGCTTTTGCTGCATTGAAGCAGTTTCCTTGGAAGCATGTGCCATTGTATATTGTAGCTCAAATGGTGGCTTCTTTGTGTTCATCATTTGCATTGAAATGGATCTTTGATCCAATAATGGGAGGAGGAGCCACTATTCCTTCATGTGGATATGCCCAAGCTTTTGCTCTTGAGTTTATTATTAGCTTCAACCTCATGTTTGTCCTCACCGCAGTCGCTACCGACACTCGAGCTGTGGGAGAGTTGGCGGGAATCGCGGTAGGAGCAACGGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCCATTGCAGTAAACAATTTCAAAGCCATATGGATTTACCTCACAGCTCCCATATTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCTGACAAAGATGGTGATTCACGCTTGCCTTCTACTGCAGCAAGCTTTCGACGATGA 2223 47.28 MAVLKLILTHARRHSFAKPPSLSTPHFLHFRRSLSSSQSDSNPDPDSPPDQSSPRTSRSVPIQPVSYAVKPKPQADENQDSPETLQSPPPPQGPPPRPEGRRTWTREDVRYMKDAPTITPVSYAARVAPLPEDTGSASGGGEEGVVTEQMEEERKKIEAANQWRRRVLRVPEEEKVTAPFPMLIKVEKKEQKVVLDLIDAIRQVKTAAKGNFDETVEAHARLGVDARKMQVLGNMTLPHSIGKTVKVAFFAEGADAEEARAAGADIVGGVELIEQIASSRKFNADKCFSTPEMMRRIGKISKILRQRGLLPDPKLGTVTSDIKGALKKAREGHMHFKMDSTSIVHVGLGKVSHSEEFLRENIGAFVNALLLAKPVGLKKASKYAGYLNSFHICSTMGPGFPITIQSLSKVADQYNRKYELLIGRVDAFSLFWNFCAMDTEEAPSTPVTPGTPGAPLFGRVKENQHGSENGKRSLLKSCISFNVDDNWGSEEGGLSKIVSSCSLPYPPVSLARKVGAEFIGTLILIFAGTATAIVNQKTEGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAVTIAFAALKQFPWKHVPLYIVAQMVASLCSSFALKWIFDPIMGGGATIPSCGYAQAFALEFIISFNLMFVLTAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAVNNFKAIWIYLTAPILGTLCGAGIYTAVKLPDKDGDSRLPSTAASFRR* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19849649 19859959 + Chy7G143910.1 Chy07g01561 231572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01561 740 PANTHER AQUAPORIN NIP2-1 442 728 IPR034294 -
Chy07g01561 740 MobiDBLite consensus disorder prediction 15 104 - -
Chy07g01561 740 PANTHER BNAA02G36290D PROTEIN 442 728 - -
Chy07g01561 740 ProSitePatterns MIP family signature. 569 577 IPR022357 -
Chy07g01561 740 Pfam Major intrinsic protein 509 717 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 Pfam Ribosomal protein L1p/L10e family 205 398 IPR028364 -
Chy07g01561 740 MobiDBLite consensus disorder prediction 84 98 - -
Chy07g01561 740 SUPERFAMILY Aquaporin-like 509 725 IPR023271 -
Chy07g01561 740 Gene3D - 197 402 - -
Chy07g01561 740 CDD Ribosomal_L1 197 402 IPR028364 -
Chy07g01561 740 CDD MIP 512 717 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 SUPERFAMILY Ribosomal protein L1 186 403 IPR023674 -
Chy07g01561 740 MobiDBLite consensus disorder prediction 130 149 - -
Chy07g01561 740 PRINTS Major intrinsic protein family signature 663 685 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 PRINTS Major intrinsic protein family signature 700 720 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 PRINTS Major intrinsic protein family signature 588 607 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 PRINTS Major intrinsic protein family signature 512 531 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 PRINTS Major intrinsic protein family signature 551 575 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 PRINTS Major intrinsic protein family signature 632 650 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy07g01561 740 MobiDBLite consensus disorder prediction 28 63 - -
Chy07g01561 740 Gene3D Glycerol uptake facilitator protein. 505 729 IPR023271 -
Chy07g01561 740 Gene3D - 240 332 IPR016095 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01238 Chy-Chr4:18910214 Chy07g01561 Chy-Chr7:19849649 4.33E-41 dispersed
Chy06g01297 Chy-Chr6:12116921 Chy07g01561 Chy-Chr7:19849649 3.18E-58 dispersed
Chy07g01561 Chy-Chr7:19849649 Chy09g01365 Chy-Chr9:15487902 5.43E-116 dispersed
Chy07g01561 Chy-Chr7:19849649 Chy01g01829 Chy-Chr1:23772559 2.51E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01561 K09874 - csv:101207134 713.761