Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01612 ATGGCAAAACAACAGAAGAAATTTAGAGGAGTGAGGCAACGGCGGTGGGGCTCATGGGTCTCCGAAATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGATGCCGCTCGAGCCTACGATGAGGCTGCCGTTCTCATGAGCGGTCGAACTGCAAAAACAAACTTTCCATTATCGACTGCCATGGTCAGAAACGAATCTAGAAATTTTTGTAAGTATATAACTCCATTTCCGTCGTTATCGGCAATTCTCAACTCTAAACTTCGCAAGGGTTATTGTAAATCTCTTCCTCCTTCTTTGACTTGCCTTCGTCTCGACACCGAGAGTTGTCGCATTGGCATTTGGCAGAGGCGTACAGGACGCTATCGAGTGGTCGACTCGAATTGGTTGATGATGGTGAAGCTTGATGAGAAAAAGAACAACGACAGATACCGAGTAACAGATCATGAGTTGTTGGAAAATGGTGTGGAAGATCAAGTGAGAGTTTCAAATGGAGCAGGAAGCTTAGACGAGGAAGAAAGAGCTGCTCTGCAAATGATTGAAGAACTTTTAAATAAAATATAG 585 44.62 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPLSTAMVRNESRNFCKYITPFPSLSAILNSKLRKGYCKSLPPSLTCLRLDTESCRIGIWQRRTGRYRVVDSNWLMMVKLDEKKNNDRYRVTDHELLENGVEDQVRVSNGAGSLDEEERAALQMIEELLNKI* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20241031 20241866 + Chy7G144420.1 Chy07g01612 231623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01612 194 PANTHER ETHYLENE RESPONSE FACTOR 1 193 - -
Chy07g01612 194 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Chy07g01612 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Chy07g01612 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Chy07g01612 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Chy07g01612 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 193 - -
Chy07g01612 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Chy07g01612 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Chy07g01612 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Chy07g01612 194 Pfam AP2 domain 7 51 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00364 Chy-Chr4:3212256 Chy07g01612 Chy-Chr7:20241031 2.86E-60 dispersed
Chy07g00348 Chy-Chr7:2841084 Chy07g01612 Chy-Chr7:20241031 6.38E-36 dispersed
Chy07g01592 Chy-Chr7:20072370 Chy07g01612 Chy-Chr7:20241031 7.06E-27 dispersed
Chy07g01612 Chy-Chr7:20241031 Chy05g00521 Chy-Chr5:5656034 7.48E-23 dispersed
Chy02g02005 Chy-Chr2:23956117 Chy07g01612 Chy-Chr7:20241031 1.56E-59 wgd
Chy05g01314 Chy-Chr5:17323731 Chy07g01612 Chy-Chr7:20241031 1.21E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18374 PF00847 AP2 4.90E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01612 - - csv:101211468 342.813