Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01729 ATGGGTGCTCCGAAGCAAAAATGGACTAGTGAAGAAGAAGCAGCTTTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGGACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAACGCTGTGGGTCCAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCTAAGTCTGTTTCCCTCTCCTCAGACATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGGGATGCAAGATATGATTGCCATAGGTGGGAAAAAAGGCTGGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTAGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCTGCTTCCGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAAAGCTAGTGTAAGAGCTGACAAGGAGGATGATATGTGTATTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCTAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGAGGGATGTAACAATTGATAGGACCCGCATAGCCTTTACTTTACTAATTGAGTTAGTGTAG 1035 44.83 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVGPSVAAQSEDELAEAKSVSLSSDIKQITGPKRSNVRKEEEEEEEEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAASERRSSMLLLEDQQKASVRADKEDDMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMRDVTIDRTRIAFTLLIELV* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20991115 20994271 - Chy7G145590.1 Chy07g01729 231740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01729 344 Pfam linker histone H1 and H5 family 155 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy07g01729 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Chy07g01729 344 Coils Coil 118 143 - -
Chy07g01729 344 PANTHER SINGLE MYB HISTONE 4 1 325 IPR044597 GO:0003691
Chy07g01729 344 SUPERFAMILY Winged helix DNA-binding domain 154 224 IPR036390 -
Chy07g01729 344 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Chy07g01729 344 MobiDBLite consensus disorder prediction 80 139 - -
Chy07g01729 344 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Chy07g01729 344 Gene3D - 152 228 IPR036388 -
Chy07g01729 344 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Chy07g01729 344 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 325 - -
Chy07g01729 344 SMART sant 4 59 IPR001005 -
Chy07g01729 344 SMART h15plus2 149 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy07g01729 344 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy07g01729 344 Coils Coil 272 309 - -
Chy07g01729 344 CDD SANT_TRF 6 56 - -
Chy07g01729 344 Gene3D - 2 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00834 Chy-Chr2:5296243 Chy07g01729 Chy-Chr7:20991115 1.21E-77 dispersed
Chy07g01729 Chy-Chr7:20991115 Chy01g02178 Chy-Chr1:26345342 8.69E-07 dispersed
Chy07g01729 Chy-Chr7:20991115 Chy04g00666 Chy-Chr4:7687592 1.17E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18381 PF00538 Linker_histone 1.40E-07 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01729 K09422 - csv:101218411 520.776