Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01729 ATGGGTGCTCCGAAGCAAAAATGGACTAGTGAAGAAGAAGCAGCTTTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGGACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATGAGTGTCATGGCTAATGGCTGGGGATCTCGAGAGAAGGCCAGGTTGGCACTTAAGAGATTACATGCTCCTAGAAAAGACGAGAACGCTGTGGGTCCAAGTGTTGCTGCCCAAAGTGAAGACGAATTGGCAGAAGCTAAGTCTGTTTCCCTCTCCTCAGACATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAAAGGGATGCAAGATATGATTGCCATAGGTGGGAAAAAAGGCTGGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCGTATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTCGTAAACTAGTCAAGGTTAAACGAAAATATAGGCTTCCTTCTGTGGCTGCTTCCGAGAGAAGGAGCTCTATGTTATTGTTGGAAGACCAGCAAAAAGCTAGTGTAAGAGCTGACAAGGAGGATGATATGTGTATTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCTAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGAGGGATGTAACAATTGATAGGACCCGCATAGCCTTTACTTTACTAATTGAGTTAGTGTAG 1035 44.83 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPRKDENAVGPSVAAQSEDELAEAKSVSLSSDIKQITGPKRSNVRKEEEEEEEEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPSVAASERRSSMLLLEDQQKASVRADKEDDMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMRDVTIDRTRIAFTLLIELV* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20991115 20994271 - Chy7G145590.1 Chy07g01729 231740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01729 344 Pfam linker histone H1 and H5 family 155 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy07g01729 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Chy07g01729 344 Coils Coil 118 143 - -
Chy07g01729 344 PANTHER SINGLE MYB HISTONE 4 1 325 IPR044597 GO:0003691
Chy07g01729 344 SUPERFAMILY Winged helix DNA-binding domain 154 224 IPR036390 -
Chy07g01729 344 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Chy07g01729 344 MobiDBLite consensus disorder prediction 80 139 - -
Chy07g01729 344 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Chy07g01729 344 Gene3D - 152 228 IPR036388 -
Chy07g01729 344 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Chy07g01729 344 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 325 - -
Chy07g01729 344 SMART sant 4 59 IPR001005 -
Chy07g01729 344 SMART h15plus2 149 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy07g01729 344 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 147 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy07g01729 344 Coils Coil 272 309 - -
Chy07g01729 344 CDD SANT_TRF 6 56 - -
Chy07g01729 344 Gene3D - 2 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01729 K09422 MYBP; transcription factor MYB, plant - csv:101218411 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00834 Chy-Chr2:5296243 Chy07g01729 Chy-Chr7:20991115 1.21E-77 dispersed
Chy07g01729 Chy-Chr7:20991115 Chy01g02178 Chy-Chr1:26345342 8.69E-07 dispersed
Chy07g01729 Chy-Chr7:20991115 Chy04g00666 Chy-Chr4:7687592 1.17E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g01729 . 1 325 Single Myb Histone (SMH) Gene Family AT1G49950 57.7 4.1e-72 268.5
Chy02g00834 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.8 5.6e-61 231.5
Chy02g00834 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 1.3e-65 246.9
Chy02g00834 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 3.7e-57 218.8
Chy04g00666 . 1 273 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 2.1e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18381 PF00538 Linker_histone 1.40E-07 CL0123 Chy TF