Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01745 ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCCCCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAACCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAATTTAATGCTCAACTTACTCAAGTTCTGAACCAACTAGAAATGGAGCGGAAGCGTGGGGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGCACAATGTTGGTGGGAACTTCCCATAGAAGAAATGGAAATGCATCAACTAGAGCAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCAGATCGGATTTTGATCCAGACTTCATCTAATGCCAATCCCCCGACGCAGTTGATCTTCCCGACTCAGATTCCGACTCAAACAACAACAACAACAAATGGCCCCAACCAGCAACCCGGGCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAGGTTTCTTTTGA 687 48.76 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVREFNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTTTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21110065 21110920 + Chy7G145750.1 Chy07g01745 231756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01745 228 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Chy07g01745 228 PANTHER MADS BOX PROTEIN 5 195 - -
Chy07g01745 228 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Chy07g01745 228 Coils Coil 138 165 - -
Chy07g01745 228 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Chy07g01745 228 Gene3D - 83 179 - -
Chy07g01745 228 Coils Coil 96 120 - -
Chy07g01745 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 195 - -
Chy07g01745 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00160 Chy-Chr2:1150363 Chy07g01745 Chy-Chr7:21110065 5.48E-46 dispersed
Chy07g01745 Chy-Chr7:21110065 Chy12g00600 Chy-Chr12:8546380 8.02E-35 dispersed
Chy07g01745 Chy-Chr7:21110065 Chy02g00756 Chy-Chr2:4686578 2.59E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18382 PF00319 SRF-TF 3.80E-24 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01745 - - csv:101221957 419.083