Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01745 ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCCCCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAACCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAATTTAATGCTCAACTTACTCAAGTTCTGAACCAACTAGAAATGGAGCGGAAGCGTGGGGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGCACAATGTTGGTGGGAACTTCCCATAGAAGAAATGGAAATGCATCAACTAGAGCAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCAGATCGGATTTTGATCCAGACTTCATCTAATGCCAATCCCCCGACGCAGTTGATCTTCCCGACTCAGATTCCGACTCAAACAACAACAACAACAAATGGCCCCAACCAGCAACCCGGGCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAGGTTTCTTTTGA 687 48.76 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVREFNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTTTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21110065 21110920 + Chy7G145750.1 Chy07g01745 231756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01745 228 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Chy07g01745 228 PANTHER MADS BOX PROTEIN 5 195 - -
Chy07g01745 228 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Chy07g01745 228 Coils Coil 138 165 - -
Chy07g01745 228 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Chy07g01745 228 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Chy07g01745 228 Gene3D - 83 179 - -
Chy07g01745 228 Coils Coil 96 120 - -
Chy07g01745 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 195 - -
Chy07g01745 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01745 - - - csv:101221957 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00160 Chy-Chr2:1150363 Chy07g01745 Chy-Chr7:21110065 5.48E-46 dispersed
Chy07g01745 Chy-Chr7:21110065 Chy12g00600 Chy-Chr12:8546380 8.02E-35 dispersed
Chy07g01745 Chy-Chr7:21110065 Chy02g00756 Chy-Chr2:4686578 2.59E-19 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18382 PF00319 SRF-TF 3.80E-24 No_clan Chy TF