Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00017 ATGATGAATTATATTCATCGTCGGAATCTGATCGGAGATCGCGATTTGATGCAGCCACTATTATTGTTGTCAAAATCCGATAGTAAACACGACGGATCTGAGATGTTTAGCAACACATCAAAAGGAGAAAACGATTGTCACGGTGGAGGAATGAGCATAAACACACACAACTTGGTAAAAAACCCACCGGATTCGCTAAGAAGAATCGATCAAATATCAAAAAACGGCGTGAGTTCTCAAACGAACAACTCCGAGACGATTGGGAATATGACAACAAACATGAAGAAGAACCAAAACAGCAGCAGCAGCAGCAGCAACAACAGTAATAGTAGTTTCATGGGAGGAAAGGGTGGGGGAGGAAATAATAATTACCGTTGCGACAGCATGGAGACGCCAGGGGTGGTGATAAAGCCGCACACGGGGGGAGACGTGAGGTGGGATGCGGTAAACATGGTGTCGAAAGGAGGGGCGTTGAATTTGAGTCATTTTCAGCTGTTGAAGAGGCTTGGATATGGAGACATCGGGAGTGTATACTTGGTGGAATTGAGAGGGACAGATACGTTTTTTGCGATGAAAGTGATGGATAAAGCTTCATTGGCGAGTAGGAATAAGTTATTGAGGGCACAAACAGAAAGGGAAATATTAGGGTTATTGGATCATCCATTTTTGCCAACACTTTATTCTTATTTTGAAACTGATAAGTTTTACTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCACTCTCTTCGTCAAAAGCAACCTAATAAATATTTTACAGAAGAAGCTGCCAGGTTCTATGCCTCAGAGGTTCTATTAGCATTAGAATACCTTCACATGTTAGGGATAGTCTACAGGGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTTTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGTCCCACCCTCGTTAAATCCTCCTCCGTCAACGTGAACACCTCCTCCACCACCGCCAACACCACCTCCAACGCCGGACCATCCGGCGCCGGCATCCTCGACGACGAATTCGTCGTCCACGGCTGTATGCAACCTTCCAATTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGAAAATCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCCGAACTCATGGCCGAACCTACCAACGTCAGATCCATGTCCTTCGTCGGCACACACGAGTATCTCGCTCCGGAGATCATCCAAGGTGAAGGTCACGGAAGCGCCGTCGACTGGTGGACCTTCGGGATCTTCCTCTACGAGCTTCTTCACGGAACTACTCCATTCAAAGGATCTGGAAACAGAGCTACTCTGTTCAATGTCGTCGAGCAACCGCTTAGATTCCCTGAGGCGCCGCAAGTTAGTCTAGCTGCTCGGGATCTGATCAGAGGACTTCTTATTAAGGAGCCGCAAAAGAGAATCGCGTACCGGAGAGGTGCAACGGAGATTAAACAGCATCCGTTCTTCGATGGAGTGAATTGGGCGTTGGTTAGAAGTGCTATGCCGCCGCATGTCCCGGAACCGGTGGATTTCACGCAGTTTGCTAGGAAGAGGAGCGGGACCGGAGCGGTAGAAGATAAGAGAGCGGTGGAAGTAGCAGCGGCAGCCGCAGCGGCAGCAGCAACGTCAACGGTTGCGGCGGGGGAGAATTGTTCGGGTTCTACTGGGAGTGATCCCAATTATGTGGATTTTGAGTACTTCTAG 1746 48.57 MMNYIHRRNLIGDRDLMQPLLLLSKSDSKHDGSEMFSNTSKGENDCHGGGMSINTHNLVKNPPDSLRRIDQISKNGVSSQTNNSETIGNMTTNMKKNQNSSSSSSNNSNSSFMGGKGGGGNNNYRCDSMETPGVVIKPHTGGDVRWDAVNMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNTSSTTANTTSNAGPSGAGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPEAPQVSLAARDLIRGLLIKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFTQFARKRSGTGAVEDKRAVEVAAAAAAAAATSTVAAGENCSGSTGSDPNYVDFEYF* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 560827 562797 + Chy8G146220.1 Chy08g00017 231803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00017 581 MobiDBLite consensus disorder prediction 72 125 - -
Chy08g00017 581 SMART serkin_6 163 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00017 581 SUPERFAMILY Protein kinase-like (PK-like) 160 528 IPR011009 -
Chy08g00017 581 Gene3D Phosphorylase Kinase; domain 1 161 246 - -
Chy08g00017 581 ProSiteProfiles Protein kinase domain profile. 163 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00017 581 Gene3D Transferase(Phosphotransferase) domain 1 377 521 - -
Chy08g00017 581 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 65 581 - -
Chy08g00017 581 Gene3D Transferase(Phosphotransferase) domain 1 247 316 - -
Chy08g00017 581 CDD STKc_phototropin_like 161 524 - -
Chy08g00017 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Chy08g00017 581 Pfam Protein kinase domain 352 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00017 581 Pfam Protein kinase domain 164 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00017 581 MobiDBLite consensus disorder prediction 28 50 - -
Chy08g00017 581 MobiDBLite consensus disorder prediction 72 117 - -
Chy08g00017 581 PANTHER FLIPPASE KINASE 1-RELATED 65 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00017 Chy-Chr8:560827 Chy12g00620 Chy-Chr12:8912134 0 dispersed
Chy08g00017 Chy-Chr8:560827 Chy08g00920 Chy-Chr8:16632692 2.25E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71408 PF00069 Pkinase 5.40E-22 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00017 - - csv:101204230 977.237