Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00018 ATGGGAGACGGCAATAACTCCAACAGAGGCCTTGTCTCCGCCAACGCCGCCAACCGGAACAACAACAACAATAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATCGGGAAGATCGGCGAGGGAACCTATGGCCTCGTGTTCCTTGCCAAAATCAAACCCCCTTCACCTAGTCGCGGCAAGTCAATTGCTATAAAAAAATTCAAGCAATCCAAGGACGGTGATGGGGTCTCCCCAACTGCCATTCGAGAAATTATGCTACTGCGGGAAATTTCACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAATCATGCAGATATGTCGTTGTATCTAGCTTTTGATTATGCTGAACATGATCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTATACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAATTATCTCCACAGTAATTGGATTATTCACCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGGGAAGAGCAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATTTGAAAATGGAGTGGTTGTCACCATTTGGTATAGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTACACTAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGCCTCCGAATCCTTTCCAGCTTGATCAACTGGACAAGATTTTTAAGGTTTTAGGCCATCCCACGATTGAGAAATGGCCAACACTTGCTAATCTTCCAAATTGGCAACAAGATGTACAGCACATTCAGGGGCATAAATATGACAATGCTGGATTATATAATGTTGTACACCTGTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACGGCAGCCCAAGCCCTAGAGCATGAGTACTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCAAACCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTCGACACAACCACAGATTTCGAGGGAACAACCAGCCTTCAACCTTCACAAACGGTAACATCTGGAAATGCTGTAAACATGCAAGGTGGTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTCGGCATGCCGAGGATGCCGCATCAGAGCATGGCTGCCTATAATCTTGCTTCCCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTTTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGCCAGGTTATCCTCCCCAGCAGAAACAACAAAGACGTTACTGA 1455 45.64 MGDGNNSNRGLVSANAANRNNNNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLFENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGPPNPFQLDQLDKIFKVLGHPTIEKWPTLANLPNWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPNQPGEKVINYPTRPVDTTTDFEGTTSLQPSQTVTSGNAVNMQGGHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMPGYPPQQKQQRRY* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 578516 588688 - Chy8G146230.1 Chy08g00018 231804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00018 484 PANTHER CELL DIVISION PROTEIN KINASE 26 478 - -
Chy08g00018 484 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Chy08g00018 484 MobiDBLite consensus disorder prediction 444 484 - -
Chy08g00018 484 ProSiteProfiles Protein kinase domain profile. 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00018 484 MobiDBLite consensus disorder prediction 448 462 - -
Chy08g00018 484 SMART serkin_6 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00018 484 MobiDBLite consensus disorder prediction 384 404 - -
Chy08g00018 484 SUPERFAMILY Protein kinase-like (PK-like) 33 350 IPR011009 -
Chy08g00018 484 MobiDBLite consensus disorder prediction 1 31 - -
Chy08g00018 484 Pfam Protein kinase domain 38 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00018 484 Gene3D Phosphorylase Kinase; domain 1 21 120 - -
Chy08g00018 484 CDD STKc_CDK8_like 37 349 - -
Chy08g00018 484 ProSitePatterns Protein kinases ATP-binding region signature. 44 72 IPR017441 GO:0005524
Chy08g00018 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Chy08g00018 484 PANTHER CYCLIN-DEPENDENT KINASE E-1 26 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00018 Chy-Chr8:578516 Chy10g00800 Chy-Chr10:14033232 3.10E-78 dispersed
Chy08g00018 Chy-Chr8:578516 Chy03g01669 Chy-Chr3:18451766 1.40E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71409 PF00069 Pkinase 2.20E-68 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00018 K02208 - csv:101203984 946.421