Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00030 ATGTCTCACAATTGCTTCTCTTACCCCTACCCAACCCCGACACCTCCTCCGCCTTCATCTCCTCCTCTCCGAGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAGCGACAGGAGCAAGAAGAAGAAGATGACGAAGATGGCGGGGATAGGAGAGGCAGCAACAACGAGGAGGAGGAGTCAGTGACGGTGGCTTTGCACATAGGGCTACCAAGCCCTAGCGCAGCAGAGATAGCATCTTTGATGTGCGGTTCTTCAACTGAAATTAATCATGTTGGTGATGGAGATCATAGCAATAATAGTAACAATAATATTCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATTCTTATTGGTCCTACCCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAATATGCAGATGCACATGTGGGGGCATGGGTCACAGTATAGAAAAGGCCCCGAATCCCTCCGAGGCACACAGCCAACAGGCATGCTACGGCTTCCTTGCTACTGCTGTGCACCGGGCTGCCGCAACAACATAGACCACCCACGAGCCAAACCATTGAAAGACTTCAGAACCCTACAAACGCATTACAAGCGCAAGCACGGTTTGAAGCCCTTCATGTGTCGAAAGTGCGGGAAGGCGTTCGCTGTGCGTGGAGATTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGTTCGGATTTCAAACACAAGCGCTCCTTAAAGGACCATGTTAAGGCCTTCGGTAACGATCACGCCGCGTACGGTGGGGGTGGAATCGATGGGTTTGGAGACGAGGAAGATGAGCCTGCTTCTGAAGTAGAGCAGGATAATGATGAGTGA 909 50.72 MSHNCFSYPYPTPTPPPPSSPPLREALPLLGLMSPPEQRQEQEEEDDEDGGDRRGSNNEEEESVTVALHIGLPSPSAAEIASLMCGSSTEINHVGDGDHSNNSNNNIQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1064979 1067550 + Chy8G146350.1 Chy08g00030 231816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00030 302 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 17 301 - -
Chy08g00030 302 MobiDBLite consensus disorder prediction 284 302 - -
Chy08g00030 302 SMART c2h2final6 139 161 IPR013087 -
Chy08g00030 302 SMART c2h2final6 223 243 IPR013087 -
Chy08g00030 302 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Chy08g00030 302 MobiDBLite consensus disorder prediction 9 24 - -
Chy08g00030 302 MobiDBLite consensus disorder prediction 280 302 - -
Chy08g00030 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 243 IPR013087 -
Chy08g00030 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Chy08g00030 302 SUPERFAMILY beta-beta-alpha zinc fingers 205 243 IPR036236 -
Chy08g00030 302 Gene3D Classic Zinc Finger 138 161 - -
Chy08g00030 302 SUPERFAMILY beta-beta-alpha zinc fingers 135 161 IPR036236 -
Chy08g00030 302 MobiDBLite consensus disorder prediction 1 64 - -
Chy08g00030 302 PANTHER ZINC FINGER PROTEIN WIP2 17 301 IPR043584 GO:0003700|GO:0010468
Chy08g00030 302 Gene3D Classic Zinc Finger 201 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01751 Chy08g00030 CCT
Chy04g01751 Chy08g00030 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01870 Chy-Chr1:24122003 Chy08g00030 Chy-Chr8:1064979 1.82E-109 dispersed
Chy04g01751 Chy-Chr4:23886755 Chy08g00030 Chy-Chr8:1064979 4.60E-90 dispersed
Chy08g00030 Chy-Chr8:1064979 Chy12g00708 Chy-Chr12:10521894 6.86E-105 dispersed
Chy08g00030 Chy-Chr8:1064979 Chy05g00122 Chy-Chr5:942824 1.21E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18385 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00030 - - csv:101209947 575.474