Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00043 ATGGCTTCCCCCTTCAAACCCCCATTGTTGCTCTCTTTGGCCTTCGCTTTCTTCATTTTGGGTTACTCTACATCTGAGGAACCAACCCTTTTGACCTTTAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCGAATTGGGTTTCTTCTTCTCACACCCATTTCTGTAATTGGACTGGAATTGCTTGTGTCACCTCCTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTCTGAACCTTTCTGGGGAAATTTCTTCTTCCATTTGTGAACTCCCTCGTTTGACTCATCTTAATCTTGCTGATAATCGATTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGGTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATTTGGGGGACGATCCCAGATCAGATTTCTCTGTTTAGTTCTTTGCGAGTGCTTGATTTTGGGAAGAATCACGTTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAAGAGTCTACAAATTCTCAATCTAAGAAGCAACTTGATTTCTGGTACAGTGCCTTCTCTTGTTTTTCATAATCTGACTGAACTTCTTGTCGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGAAATTCCTAGTGAGATTGGGAAGCTTGAGAAACTTGAGGAGTTATTGCTTCATACCTCTGGTTTCTATGGTGAAATCCCTTCGTCTTTGTTGGGATTGAGAAGTTTGAGTGTTTTGGATCTTTCTCAGAACAATCTCACTGGGAAAATCCCCGAAATGTTGGGTTCTTCTTTGAAAAATTTGGTGTATTTTGATGTTTCTGAGAATAAGCTTGCGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAAGCCTTGTGAGTTTTAGTGTTCATACCAATTTTTTCACAGGAAGTTTGCCTAATTCCTTGAACCAATGCTTGAATCTTGAAAGGTTTCAAGTTCAGAATAATGGGTTTTCTGGGGATTTTCCTAAAGCTTTGTGGTCATTACCTAAAATTAAGCTCATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAATTCCAGAGTCTATATCAATGGCTGCTCACCTTGAGCAAGTTCAGCTCGACAACAACAGCTTTTCAAGTAAAATACCTTGGGGTCTTGGGTCGATTCGAAGCTTGTATCGATTCTCTGTTTCGCTCAATCGCTTTTATGGTGAATTGCCACCAAACTTCTGTAATTCGCCATTAATGAGTATAATTAATTTATCACATAATTCTCTTTCTGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCTGGCAATAGTCTTACTGGAGGAATTCCCACTTCCCTTGCAAATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACCGGTTCAATTCCTCAAGGACTCGAAAACTTAAAGCTTGCACTCTTTAATGTTTCGTTCAATCGATTATCAGGCACTGTTCCATTCTCTTTGATTTCGGGGTTACCAGCTTCATTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTCCTCATGGCCATCCAACAAACCATATGTATGGACTTAACAAAATGACATGTGCTCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTAATTTTGTATTATCGATCCTACAGACCGAAGTCCGGACTCGATAACTGGCATTCGGTCTACTTCTATCCTCTTAGAATCAGTGAGCATGAGTTGGTCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTATTCATTTTAAGCTTACCAAGCCGTGAACTGATCGCTGTAAAGAAACTCGTTAATTTTGGGAGACGTTCGTGGAAGTCGTTGAAAGCTGAGATCAAGACATTGGCCAAGATTAGACACAAAAATATCATCAAAATTCTGGGGTTTTGCCATTCTGATGCCATTTTTCTGATTTACGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGATTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCGTACATTCACAAAGACTATGTCCCACATTTACTTCATCGAAACGTCAAGTCGTCGAACATTCTACTGGACGTCGACTTTGTCCCAAAACTCACTGATTTTGCTCTTCACCATATTGTTGGAGAGTCGGCATTTCACTCGACAGTAGCTTCGGAATCTTCTCACTCCTGCTATATTGCACCGGAATATAAATACAACAAAAAAGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTGGAACTTTTGACTGGTAGACAAGCCGAGCGATCGGAATCAACAGAGGACTCTCTTGATGTCGTTCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTCTCAGAACATTGTCAACAACAGATGCTGGAGGCTCTAGACATTGCTCTCCAATGCACTTCTTTGATGTCTGAAAAACGACCTTCGATGCTCGAAGTCGCCAAGGCCCTTCAACTGATTGGCTCGACAACGAACCTTCAGGATGCAACCTTCTTGGGTGCAGAGGATAAAAATTATAGGTTTATTACTAGAAACGTGTTTGGTGAAGTTGATTTTGATGCGAGTGTGGTTCAATATCTAGAACCTGCTCTTGGAAGAAATCTTGGTGTGAAGTCTAAAATTTTGATCCAACAAATAAAGATGACTCATAAGATGAGGTGTATTCCAAATGATGAATTTCAAAAGGATATAATGAATGCTCAAAATCATACATGTACATTCCTGCACTCCAATTCCTTGTTACGAAGTAGGAAAGGAGGGGAAGTGTGCAACAAAAGATGTTCAAATCATTCTGATTTTGAAGAAAGTGTTGGTTGGAGGGATGATGATGAAGTGAAAGAGATTGAAATGTTTGTTCAAAAGAGTGCTAAAACGGTGATAGAGATGAGGAGGAGGCAAGGCAACAATGGTGGAATCAGAATGTTCCGTATATGGCTTAAAAGTAAATAA 3090 40.91 MASPFKPPLLLSLAFAFFILGYSTSEEPTLLTFKASIKDSTNSLSNWVSSSHTHFCNWTGIACVTSSSPSLLSVSAIDLQGLNLSGEISSSICELPRLTHLNLADNRFNQPIPLHLSQCRSLETLNLSNNLIWGTIPDQISLFSSLRVLDFGKNHVEGKIPEGIGALKSLQILNLRSNLISGTVPSLVFHNLTELLVVDLSENSYLLSEIPSEIGKLEKLEELLLHTSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKIPEMLGSSLKNLVYFDVSENKLAGSFPNGFCSGKSLVSFSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGDFPKALWSLPKIKLIRAENNGFSGEIPESISMAAHLEQVQLDNNSFSSKIPWGLGSIRSLYRFSVSLNRFYGELPPNFCNSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLANLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNRLSGTVPFSLISGLPASFLQGNPDLCGPGLQTPCPHGHPTNHMYGLNKMTCALISLACVLGVLSLAAGLILYYRSYRPKSGLDNWHSVYFYPLRISEHELVMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGRRSWKSLKAEIKTLAKIRHKNIIKILGFCHSDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHKDYVPHLLHRNVKSSNILLDVDFVPKLTDFALHHIVGESAFHSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELLTGRQAERSESTEDSLDVVQWVRRKVNIANGASQVLDPSVSEHCQQQMLEALDIALQCTSLMSEKRPSMLEVAKALQLIGSTTNLQDATFLGAEDKNYRFITRNVFGEVDFDASVVQYLEPALGRNLGVKSKILIQQIKMTHKMRCIPNDEFQKDIMNAQNHTCTFLHSNSLLRSRKGGEVCNKRCSNHSDFEESVGWRDDDEVKEIEMFVQKSAKTVIEMRRRQGNNGGIRMFRIWLKSK* 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1573346 1577690 + Chy8G146480.1 Chy08g00043 231829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00043 1029 Gene3D Ribonuclease Inhibitor 267 528 IPR032675 -
Chy08g00043 1029 ProSiteProfiles Protein kinase domain profile. 596 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00043 1029 SMART LRR_typ_2 241 265 IPR003591 -
Chy08g00043 1029 SMART LRR_typ_2 192 217 IPR003591 -
Chy08g00043 1029 SMART LRR_typ_2 266 290 IPR003591 -
Chy08g00043 1029 SMART LRR_typ_2 95 119 IPR003591 -
Chy08g00043 1029 SMART LRR_typ_2 457 481 IPR003591 -
Chy08g00043 1029 SMART LRR_typ_2 120 143 IPR003591 -
Chy08g00043 1029 SMART LRR_typ_2 167 191 IPR003591 -
Chy08g00043 1029 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Chy08g00043 1029 PANTHER OSJNBB0022F23.6 PROTEIN 8 875 - -
Chy08g00043 1029 SUPERFAMILY L domain-like 205 526 - -
Chy08g00043 1029 SUPERFAMILY L domain-like 25 305 - -
Chy08g00043 1029 Gene3D Ribonuclease Inhibitor 23 188 IPR032675 -
Chy08g00043 1029 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 875 - -
Chy08g00043 1029 Pfam Protein tyrosine and serine/threonine kinase 605 863 IPR001245 GO:0004672|GO:0006468
Chy08g00043 1029 Gene3D Transferase(Phosphotransferase) domain 1 671 885 - -
Chy08g00043 1029 SUPERFAMILY Protein kinase-like (PK-like) 605 873 IPR011009 -
Chy08g00043 1029 Gene3D Phosphorylase Kinase; domain 1 589 670 - -
Chy08g00043 1029 Gene3D Ribonuclease Inhibitor 189 266 IPR032675 -
Chy08g00043 1029 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515
Chy08g00043 1029 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Chy08g00043 1029 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Chy08g00043 1029 Pfam Leucine rich repeat 435 493 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00043 Chy-Chr8:1573346 Chy06g01584 Chy-Chr6:17955989 6.42E-138 dispersed
Chy08g00043 Chy-Chr8:1573346 Chy12g00907 Chy-Chr12:14466675 1.79E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71411 PF07714 PK_Tyr_Ser-Thr 3.70E-36 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00043 - - csv:101222175 1682.92