Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy08g00054 | ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGATGTAGCACAGAATCTCAAGAAATTGGCTAATGAACAGGACTGCCCTCATTTGCTCTTTTATGGCCCCTCCGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGACCCAGTGCGGAGAAGGTGAAGGTCGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGTTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGTTTTGGTTCTAAATGATGTTGACAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCTACAGAGGAGCAGATTGTCAAGGTTTTAGAGTTCATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGGTTTGCTTCCCGTATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTCAGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGAAATAATGAAGGAGCAGAGTCCCAAAAGATTGTTCCAGGTCCGTGGGAAGTTATATGAGTTACTGGTTAATTGTATCCCTCCGGAGATCATATTGAAGAGACTGCTTTATGAGTTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATTTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAAACTTTCCTCATTTCAACATTCGGCTAA | 1065 | 42.35 | MLWVDKYRPKTLDQITVHQDVAQNLKKLANEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG* | 355 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1871086 | 1876643 | - | Chy8G146590.1 | Chy08g00054 | 231840 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy08g00054 | 354 | CDD | AAA | 19 | 181 | - | - | |
| Chy08g00054 | 354 | Gene3D | - | 1 | 189 | IPR027417 | - | |
| Chy08g00054 | 354 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 239 | IPR027417 | - | |
| Chy08g00054 | 354 | Gene3D | - | 190 | 248 | - | - | |
| Chy08g00054 | 354 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 2 | 346 | - | - | |
| Chy08g00054 | 354 | Gene3D | - | 252 | 345 | - | - | |
| Chy08g00054 | 354 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 251 | 346 | IPR008921 | GO:0003677|GO:0006260 | |
| Chy08g00054 | 354 | Pfam | DNA polymerase III, delta subunit | 19 | 187 | - | - | |
| Chy08g00054 | 354 | PANTHER | REPLICATION FACTOR C SUBUNIT 3 | 2 | 346 | - | - | |
| Chy08g00054 | 354 | CDD | HLD_clamp_RFC | 189 | 257 | - | - | |
| Chy08g00054 | 354 | SMART | AAA_5 | 33 | 192 | IPR003593 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g00635 | Chy-Chr2:3885700 | Chy08g00054 | Chy-Chr8:1871086 | 4.69E-76 | dispersed | |
| Chy06g00279 | Chy-Chr6:1867778 | Chy08g00054 | Chy-Chr8:1871086 | 6.08E-52 | dispersed | |
| Chy07g00561 | Chy-Chr7:4772837 | Chy08g00054 | Chy-Chr8:1871086 | 9.59E-33 | dispersed | |
| Chy08g00054 | Chy-Chr8:1871086 | Chy05g00194 | Chy-Chr5:1540002 | 1.35E-06 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy08g00054 | K10756 | - | csv:101221072 | 679.093 |