Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00141 ATGGCGGATTACGATTTAACTCCACGAATCGCGCCAAATCTGGACCGTCATCTTGTCTTCCCTCTCCTTGAGTTCCTTCAAGAGAGACAGCTTTACCCCGATGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAATAAGACAAACATGGTTGATTACGCCATGGACATCCACAAGTCACTCTACCACACTGAAGACGTTCCTCAAGGCATGGGCAATATGGTGGACAGAAGGGCGGAAGTGGTGGCGAGGCTAAAGGCTTTGGAGGAGTCTGCAGCACCACTTGTTGCTTTTTTGCAGAATCCGGCTGCGGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAGATGCTTGATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCATTGTATCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAAACAGTGAAAGGAGCCTCAGTGCTCTTTGGGGAAAATTGGCAGCTGAAGTATTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATTGACTCTAAGAATTTTTCATCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAATCACGACAATGGGAGAACACAGATCATTGATCTATTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCACATCTTTTACGCTATTTGGCTACTGCCTTCATTGTGAACAAAAGGCGGAGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTCTTGACTTGTGTCTATGTCAATTATGATTTTGACGGGGCACAAAAGAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGACCCTTTCCTAGGAAAGAGGCTTGAAGAAGGCAACCTTTCTACCGTTCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACATCAGCGCATTGATATGAATGTTCTTGCTGAGAAGCTGAACTTAAATTACGAGGAAGCTGAGAGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTCGATGCAAAGATTGATTCTAAGACAGGAACGGTTATAATGGAACCAATCCAGCCGAACGTATATGAGGAACTGATAGATCACACCAAATCATTATCCGGGCGCACATACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAGGCAACTAGATAA 1323 42.48 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQGMGNMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLDDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMNVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPIQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3022984 3026633 + Chy8G147460.1 Chy08g00141 231927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00141 440 PIRSF Transl_init_eIF3e 1 440 IPR016650 GO:0003743|GO:0005737|GO:0005852
Chy08g00141 440 ProSiteProfiles PCI domain profile. 222 406 IPR000717 -
Chy08g00141 440 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 432 IPR016650 GO:0003743|GO:0005737|GO:0005852
Chy08g00141 440 Pfam PCI domain 288 402 IPR000717 -
Chy08g00141 440 Pfam eIF3 subunit 6 N terminal domain 5 140 IPR019010 -
Chy08g00141 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 438 IPR016650 GO:0003743|GO:0005737|GO:0005852
Chy08g00141 440 SUPERFAMILY TPR-like 123 196 IPR011990 GO:0005515
Chy08g00141 440 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 335 419 - -
Chy08g00141 440 SUPERFAMILY Winged helix DNA-binding domain 336 406 IPR036390 -
Chy08g00141 440 SMART PINT_4 335 419 IPR000717 -
Chy08g00141 440 Gene3D - 227 436 - -
Chy08g00141 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 438 - -
Chy08g00141 440 SMART eIF3_N_2 5 140 IPR019010 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00141 K03250 - csv:101205199 867.84