Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00183 ATGTTTGGCCCCAAAGAACAAAACCCTCTTCCTCCAACTCCAAAATCCACCATGGGTAGAGGCAGAGTTGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTGTCTGTTCTTTGTGATGCTGAGGTCGCCATTGTTGTCTTCTCCAGTACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTATAGAGGACAGGGCATGGAATTGGATTTTCCTAAAGAGACTTTGGACCACCCAGCACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCCGAGGAGGAGATTGGAAAGCTAAAGTTAGCATATACGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAGAACTTAGAAAACCAGTTGCGGGAAGGGATCATATCTATCAAAGACAAGAAGGAGACGTTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGGGGGAAGTAGTCATTTCAGAGAACGAGACCCTGCGAAAACAGCTCGAGGAGTTCCAGCACAGAAATAATATAACACTTCAGGAGTCCAGTCCCCTTCAGAGATCCTACTTTTCGGATTCGAAAACTGCTTCTACCAATGAGACCGAGGTCAAGACGGAGGTAGAGGAAAATGACTTAGAAATTTCCTTGCATCTGGGGTTGTCATTGGATGGTCAACGAAAAAGGAAACGATCGGTTGAAGGTGCGAGCACTGACACAACCTGTAGTCAAGTAGAGTTGGAAGGGGATGCACTATTAGCAAATGACGAACTCTCTCGTCATTTTGGTATGTAA 858 44.64 MFGPKEQNPLPPTPKSTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPAQLPPSDSDAKSSEEEIGKLKLAYTQMRGQELDSLSFIDLQNLENQLREGIISIKDKKETLLLEQLQRCRSQGEVVISENETLRKQLEEFQHRNNITLQESSPLQRSYFSDSKTASTNETEVKTEVEENDLEISLHLGLSLDGQRKRKRSVEGASTDTTCSQVELEGDALLANDELSRHFGM* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4250489 4254001 - Chy8G147880.1 Chy08g00183 231969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00183 285 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 MobiDBLite consensus disorder prediction 210 229 - -
Chy08g00183 285 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy08g00183 285 Pfam K-box region 117 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy08g00183 285 Coils Coil 143 163 - -
Chy08g00183 285 Coils Coil 183 203 - -
Chy08g00183 285 Gene3D - 30 95 IPR036879 GO:0003677|GO:0046983
Chy08g00183 285 MobiDBLite consensus disorder prediction 99 118 - -
Chy08g00183 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 MobiDBLite consensus disorder prediction 1 21 - -
Chy08g00183 285 CDD MADS_MEF2_like 19 87 IPR033896 GO:0000977|GO:0045944
Chy08g00183 285 SUPERFAMILY SRF-like 19 88 IPR036879 GO:0003677|GO:0046983
Chy08g00183 285 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Chy08g00183 285 PANTHER BNAC04G24260D PROTEIN 18 251 - -
Chy08g00183 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01233 Chy-Chr4:18872839 Chy08g00183 Chy-Chr8:4250489 6.28E-53 dispersed
Chy08g00183 Chy-Chr8:4250489 Chy09g00018 Chy-Chr9:204900 8.12E-36 dispersed
Chy12g01534 Chy-Chr12:19058921 Chy08g00183 Chy-Chr8:4250489 1.03E-18 dispersed
Chy08g00183 Chy-Chr8:4250489 Chy02g00197 Chy-Chr2:1342093 5.18E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18387 PF01486 K-box 3.10E-12 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00183 - - csv:101205930 541.191