Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00213 ATGGACGACGTTCGACCATCCAACTCTGGTTTCTTGTCCTGGCAGCGAACCATGAGCTCCAGATTCGCGCTTCCGTTGATTCAAGACGCTGCAAATTTGATCATGGAACATCGCGGCGTAATATTTGGTGACTGTGCCGATACTCGAGTCGACGATGACGAAGATGATAATGAATACGAGCGTCGTGTTCTATTCCGGAATGGGTCTTCCTTTATCAAGCCTATTTTGGTACTCGACTTGTTCTGGAATTTGTTCTTCGTCTTTTTATCTGTCATAGTGCTGGTATTGTCTGCAGAAGAGAAACCTACTGCTCCTTTGAGATTCTGGCTTTCGGGTTATGCTGTTCAGTGCCTTTTCCATGTCTTTTTTGTGTTCGTTGCTTACTTGAGGAGTAGTCGCTATCGACTTGGGTTTGAGAATCGTGGGGCTCAGGATGAACTTCGCCTTTCTCACAATCGTATAAGAGTTATGAAAAGGTTGGAAGCACTGAACACAATGGTAGCATATATCTGGTGGGTATTTGGATTCTATTGGATTGTCATGGGTGGCCAAGCTCTTCTGGAAGGTTCTCCCCGACTGTACTGGTTGGCAGTTGTTTTCTTAGCCTTTGATGTGTTTTTTATTATCTTCTGCACCGGGATGGCGTTTGTTGGTTTCTTTGCTGTTTGCTGCATAATACCATTTTTAGCATATGGTTATACCATGAATTTCCTAGAAGGTGCCTCTGAGGATGAAATTAGGGCACTTCCCAAGTACAGGTTTCACCAAGACAATCCACTTGAGTCGTTCGACAATGACAAGAAACAAGAAGTTGGGATGACATTGGTGGAGCCTGGCTACAATGGTCATACAACTGAACACACTCTAAATGCAGAGGACTCGGCATGCTGCATATGCCTTGCTCAGTATATACATGGAGTTCAATTGTGCATGCTTCCTTGTAATCATCATTTCCATACTCGATGCATTGTCAAATGGCTTCGAATAAACGCAACCTGCCCCCTCTGCAAGTTCAGCATCGGACAAGGTGATTCCTTGGTCTGA 1044 44.54 MDDVRPSNSGFLSWQRTMSSRFALPLIQDAANLIMEHRGVIFGDCADTRVDDDEDDNEYERRVLFRNGSSFIKPILVLDLFWNLFFVFLSVIVLVLSAEEKPTAPLRFWLSGYAVQCLFHVFFVFVAYLRSSRYRLGFENRGAQDELRLSHNRIRVMKRLEALNTMVAYIWWVFGFYWIVMGGQALLEGSPRLYWLAVVFLAFDVFFIIFCTGMAFVGFFAVCCIIPFLAYGYTMNFLEGASEDEIRALPKYRFHQDNPLESFDNDKKQEVGMTLVEPGYNGHTTEHTLNAEDSACCICLAQYIHGVQLCMLPCNHHFHTRCIVKWLRINATCPLCKFSIGQGDSLV* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4931006 4934402 - Chy8G148180.1 Chy08g00213 231999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00213 347 SMART ring_2 296 336 IPR001841 -
Chy08g00213 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 344 IPR013083 -
Chy08g00213 347 PANTHER RING-FINGER UBIQUITIN LIGASE 13 347 - -
Chy08g00213 347 PANTHER TARGET OF ERK KINASE MPK-1 13 347 - -
Chy08g00213 347 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Chy08g00213 347 SUPERFAMILY RING/U-box 282 341 - -
Chy08g00213 347 Pfam Ring finger domain 295 337 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02327 Chy08g00213 CCT
Chy04g02327 Chy08g00213 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01690 Chy-Chr4:23312547 Chy08g00213 Chy-Chr8:4931006 2.08E-114 dispersed
Chy08g00213 Chy-Chr8:4931006 Chy09g00829 Chy-Chr9:10983666 8.42E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00213 - - csv:101214166 682.174