Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00232 ATGGAAGGAAAGGGAAGTGGAATTGCCAATTTTGTTGAGGGAGCACAACCTTACATTGCTATGATCTCTCTCCAATTTGGCTATGCTGGGATGAATATCATCACCAAGGTAGCTCTCAACCGCGGAATGAGCCATTACGTTCTTGTCACCTATCGGCAAGCCTTTGCCACCATTGTCCTTGCTCCCTTCGCCTTCTTCTTCGAAAGGAAAATGAGACCCAAGATCAGTTTCGCTATGTTAATGCAGATTTTTCTTCTGGGTTTGTTAGGACCAGTGATTGATCAGAATTTTTATTATGCTGGATTGAAGCTCACTTCAACTACCTTTTCATGTGCCACGAGCAATATGCTTCCTGCAATGACATTCATCTTGGCTCTTCTTTGTAGGTTGGAGAAATTGGAGATGAAGAAAGTGAGGTGCCAAGCCAAGGTGGTGGGAACATTGGTGACAGTGGGTGGAGCCATTTTGATGACTTTATACAAAGGGAATGTCATAAGCTTCTTTTGGTCTCACCATAACAATAATTATCTTCACAGCTCTTCTGCTTCTTCCAATTACTATTCCTTTGAAAGCACTTATCAAGATTGGCTCAAGGGTTCCATTCTTCTCCTTTTTGCCAATCTTGCTTGGGCTTTGTTCTTCATCGTTCAGGCAATGACATTAAGGAATTACACAGCCCATCTGTCACTTACAACCCTTATGTGTTTCTTTGGGACTTTGCAATCCATGGCTGTCACATTTGTGATGGAACACAAAGCTTCTGTTTGGAACATTGGATGGGATATGAACCTTCTTGCTTCTGTTTATGCTGGAATAGTTTCATCAAGCATAGCTTATTATGTACAAGGGATGATTATGCAAAAGAGAGGGCCAGTTTTTGTCACAGCCTTTACCCCTATGATCATGATCATTGTTGCCATTATGGGCTCCTTCATGCTTGCTGAGAAGATCTATATCGGACGTGTTGTTGGAGGTATTGTAATGGTGGTGGGGCTGTACTCAGTGCTATGGGGAAAATACAAAGATTACAAAGAAAAGGAAGCAATAATAGAAGAGACCACCATAGTTGAACCAGTGAAGCTTTTAATAAGTGAAGACAAATTGGAGAAAAATAAGAAGAAGAGATTAGCAACAGTAGTTGAAAAAGAAGAAGAAGAAGAAGAAACGACAGCATCGACATCGTTAAACGACATCGAAATGCAAAGGAACGAAACAACATCAAATGTCGACGACAATAATAACAATAATGTTGCAACATTGCGTTGTCCTTCTCCACTACCCATTGTTGTTGTTATAGCTATGAATGAAGCACCACCAAAAGTGTTTTATTAA 1332 40.54 MEGKGSGIANFVEGAQPYIAMISLQFGYAGMNIITKVALNRGMSHYVLVTYRQAFATIVLAPFAFFFERKMRPKISFAMLMQIFLLGLLGPVIDQNFYYAGLKLTSTTFSCATSNMLPAMTFILALLCRLEKLEMKKVRCQAKVVGTLVTVGGAILMTLYKGNVISFFWSHHNNNYLHSSSASSNYYSFESTYQDWLKGSILLLFANLAWALFFIVQAMTLRNYTAHLSLTTLMCFFGTLQSMAVTFVMEHKASVWNIGWDMNLLASVYAGIVSSSIAYYVQGMIMQKRGPVFVTAFTPMIMIIVAIMGSFMLAEKIYIGRVVGGIVMVVGLYSVLWGKYKDYKEKEAIIEETTIVEPVKLLISEDKLEKNKKKRLATVVEKEEEEEETTASTSLNDIEMQRNETTSNVDDNNNNNVATLRCPSPLPIVVVIAMNEAPPKVFY* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5223604 5228006 - Chy8G148370.1 Chy08g00232 232018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00232 443 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
Chy08g00232 443 PANTHER WAT1-RELATED PROTEIN 11 371 - -
Chy08g00232 443 Pfam EamA-like transporter family 198 336 IPR000620 GO:0016020|GO:0016021
Chy08g00232 443 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020|GO:0016021
Chy08g00232 443 PANTHER WAT1-RELATED PROTEIN 11 371 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01676 Chy-Chr4:23141239 Chy08g00232 Chy-Chr8:5223604 2.25E-139 dispersed
Chy04g01678 Chy-Chr4:23148707 Chy08g00232 Chy-Chr8:5223604 2.59E-157 dispersed
Chy07g00654 Chy-Chr7:6254589 Chy08g00232 Chy-Chr8:5223604 1.45E-121 dispersed
Chy08g00232 Chy-Chr8:5223604 Chy10g00710 Chy-Chr10:13443093 6.12E-151 dispersed
Chy10g00923 Chy-Chr10:14895853 Chy08g00232 Chy-Chr8:5223604 2.25E-44 dispersed
Chy11g00065 Chy-Chr11:676935 Chy08g00232 Chy-Chr8:5223604 4.02E-60 dispersed
Chy08g00232 Chy-Chr8:5223604 Chy08g00779 Chy-Chr8:15468048 1.28E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00232 - - csv:101216496 768.459