Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00237 ATGAGAGAAGAACACTCGAATTGGTTTTCTAGATGGGAAGAGGAGCTCCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCTTCTCCGCCGCTTTCAAATCCTCTCCCTGGTTCCGGCAACGGAATTGTGCCGCCAAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACTCTCAAGCGGCCGCGCCTTGTTTGGACGCCTCAACTTCACAAACGATTTGTTGATGCTGTTGCTCATTTGGGGATCAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGGTTGACTAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGAATGCAGGGCTTGTCCGGTGGCGGTGGCGGCGGAGGTGCTGCCTTGGTTGGTTCATCCGATCCCGCTACTGACCATTTGTTTGCTAGCTCACCAGTTCCTCCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTATGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATAGCTGCTGCTGCTGCTGTCGCCGGCCATACACAGCTCCAGCCGCCGTATCATCGGCAGGTTGGACATTTTGGGTCGCCGCCAAATGGACAGTTCGAGCACCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAACACCAGTGCATAATTCTGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA 906 52.76 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIVPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAALVGSSDPATDHLFASSPVPPHLLHSARTSSDHFLPYVPMATLQQHHHHQQQIAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGTPVHNSVPNYIEDLESANATGGRKVLTLFPTGDD* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5370739 5371644 - Chy8G148420.1 Chy08g00237 232023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00237 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Chy08g00237 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Chy08g00237 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Chy08g00237 301 MobiDBLite consensus disorder prediction 1 91 - -
Chy08g00237 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 301 IPR044841 GO:0003700|GO:0006355
Chy08g00237 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Chy08g00237 301 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 301 - -
Chy08g00237 301 Gene3D - 94 156 - -
Chy08g00237 301 MobiDBLite consensus disorder prediction 1 18 - -
Chy08g00237 301 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01682 Chy-Chr4:23196235 Chy08g00237 Chy-Chr8:5370739 2.23E-121 dispersed
Chy08g00237 Chy-Chr8:5370739 Chy11g01210 Chy-Chr11:18279051 1.59E-36 dispersed
Chy08g00237 Chy-Chr8:5370739 Chy12g00223 Chy-Chr12:2599006 3.57E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18389 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00237 - - csv:101216969 541.962