Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy08g00237 | ATGAGAGAAGAACACTCGAATTGGTTTTCTAGATGGGAAGAGGAGCTCCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCCAGCAATAGCAGTCCGCCGTTGCCTTGTCCTTCTCCGCCGCTTTCAAATCCTCTCCCTGGTTCCGGCAACGGAATTGTGCCGCCAAACTCGGCGGATTTCGGCGATTCTGCCGATTTGGGCTCCGGCGCCGCCAGCGACGAGCCGGCTCGGACTCTCAAGCGGCCGCGCCTTGTTTGGACGCCTCAACTTCACAAACGATTTGTTGATGCTGTTGCTCATTTGGGGATCAAAAATGCTGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGGTTGACTAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGAATGCAGGGCTTGTCCGGTGGCGGTGGCGGCGGAGGTGCTGCCTTGGTTGGTTCATCCGATCCCGCTACTGACCATTTGTTTGCTAGCTCACCAGTTCCTCCCCATTTGCTTCACTCTGCTCGCACCAGTTCAGACCATTTCTTGCCCTATGTTCCCATGGCCACTCTGCAGCAGCACCACCATCACCAGCAGCAGATAGCTGCTGCTGCTGCTGTCGCCGGCCATACACAGCTCCAGCCGCCGTATCATCGGCAGGTTGGACATTTTGGGTCGCCGCCAAATGGACAGTTCGAGCACCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAACACCAGTGCATAATTCTGTTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCACTGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGA | 906 | 52.76 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIVPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGAALVGSSDPATDHLFASSPVPPHLLHSARTSSDHFLPYVPMATLQQHHHHQQQIAAAAAVAGHTQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGTPVHNSVPNYIEDLESANATGGRKVLTLFPTGDD* | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5370739 | 5371644 | - | Chy8G148420.1 | Chy08g00237 | 232023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy08g00237 | 301 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Chy08g00237 | 301 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677 | |
Chy08g00237 | 301 | Pfam | Myb-like DNA-binding domain | 101 | 149 | IPR001005 | - | |
Chy08g00237 | 301 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Chy08g00237 | 301 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 301 | IPR044841 | GO:0003700|GO:0006355 | |
Chy08g00237 | 301 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - | |
Chy08g00237 | 301 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 301 | - | - | |
Chy08g00237 | 301 | Gene3D | - | 94 | 156 | - | - | |
Chy08g00237 | 301 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Chy08g00237 | 301 | MobiDBLite | consensus disorder prediction | 46 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g01682 | Chy-Chr4:23196235 | Chy08g00237 | Chy-Chr8:5370739 | 2.23E-121 | dispersed | |
Chy08g00237 | Chy-Chr8:5370739 | Chy11g01210 | Chy-Chr11:18279051 | 1.59E-36 | dispersed | |
Chy08g00237 | Chy-Chr8:5370739 | Chy12g00223 | Chy-Chr12:2599006 | 3.57E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18389 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy08g00237 | - | - | csv:101216969 | 541.962 |