Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00239 ATGAGAGAAGGTGAGGCAGTGAACGACGGAGGAAAACAAGCAAAGGGCGCGGCGGGAGCAGAGGCAAAGAACCGCCGTGCACTGGGTGATATAGGAAATTTGGTAACTGTTCGAGGAATTGATGCAAAGGCAAATCGTCGCCCTATTACGAGGAGTTTCTGTGCTCAGTTGCTTGCCAATGCTCAAGCTGCTGCAAAGGCTGAAAACAATAAGAAACAAGTGCCTGTTAGTATAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTGTGGCTGTAAAGAAAGCAGGAGGTCCCAAGCCAGCCACTAAGAAAGTCATTGTAAAACCAACATCGGAGGTTATTGATATAAGTCCTGACACTGTCGAAAAAGTTGAAGAGAAAGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCACAAAGAAGAAAGCACAGACTCTTACTTCAGTCTTGACTGCTAGAAGCAAGGCTGCCTGTGGTATAACCAAGAAACCTAAAGAACAGATCTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCTGTTGAATATGTCGAGGATATTTACACCTTCTATAAAGAAGCTGAGAACGAGAGCAGACCTCATGATTATATGGATTCACAACCTGAAATAAACCCTTCAATGAGGGCTATTTTGGTGGATTGGCTGGTTGATGTCCACAACAAATTTGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGTTTCCTTGCGACAAAGATTGTTCCAAGAAGGGAATTGCAATTGGTGGGAATTGGAGCAATGCTTATAGCCTCCAAGTATGAAGAAATTTGGGCTCCAGAGGTAAATGACTTTGTGTGCCTTTCGGATAGAGCTTACACTCATCAACAGATTCTAGTGATGGAGAAGAAGATACTTGGCAAGTTGGAGTGGACCTTGACTGTTCCCACACCATATGTTTTCCTTGCTCGATTTATCAAGGCATCCAAAGACTCGAACCACGAGGTACAAGAAATCAGTACAACTCTTTTAGGGGATTCCTTTCTTGACAGTTAA 1062 43.6 MREGEAVNDGGKQAKGAAGAEAKNRRALGDIGNLVTVRGIDAKANRRPITRSFCAQLLANAQAAAKAENNKKQVPVSIDGAAPILDAGVVAVKKAGGPKPATKKVIVKPTSEVIDISPDTVEKVEEKEVKCANKKKEGEGPTKKKAQTLTSVLTARSKAACGITKKPKEQIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINPSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHQQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEVQEISTTLLGDSFLDS* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5394553 5395958 - Chy8G148440.1 Chy08g00239 232025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00239 353 Gene3D - 191 339 - -
Chy08g00239 353 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 15 333 - -
Chy08g00239 353 ProSitePatterns Cyclins signature. 220 251 IPR006671 -
Chy08g00239 353 Pfam Cyclin, N-terminal domain 191 315 IPR006671 -
Chy08g00239 353 CDD CYCLIN 219 308 IPR013763 -
Chy08g00239 353 Gene3D - 205 316 - -
Chy08g00239 353 SUPERFAMILY Cyclin-like 180 315 IPR036915 -
Chy08g00239 353 PIRSF Cyclin_A_B_D_E 1 346 IPR039361 -
Chy08g00239 353 PANTHER CYCLINS 15 333 IPR039361 -
Chy08g00239 353 SMART cyclin_7 225 309 IPR013763 -
Chy08g00239 353 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00192 Chy-Chr5:1517240 Chy08g00239 Chy-Chr8:5394553 8.97E-93 dispersed
Chy08g00239 Chy-Chr8:5394553 Chy03g00762 Chy-Chr3:10263733 2.38E-41 dispersed
Chy08g00239 Chy-Chr8:5394553 Chy07g00389 Chy-Chr7:3102293 7.70E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00239 K21777 - csv:101217210 566.614