Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00289 ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTCCCGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATTGATAGGAAATTGATTGAAAAACTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGGAGTAAAGCTTTGGAGTTTTTGGGTTATGACCCTGGAAATAGCTCGATTCCTTCTGTTTCATCTAACCATCACCATCACCATCAGGAAGTGGATGTGAATCTTGTAATTACTGATTACTGTATGCCTGAAATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCTAGAATCAATAGGGTGGATTTGATGATTGGAAACAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCAACTTTCGGATGTCAACAGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGACAAACCAGAAAGAACAACAGAAGACCACCCTGATTCAAGCCAATCTCAAGCACTAGAACAACAACAACAACGTGAACAAGAACAATCACGACCGCTACTGCAGCAGATCCCAACATCGCTGCAAGATCAAGATCAGATACAATCTGTACCACTTCTGCCAACACCACTACAGGAGCAAGAACAGTTGCAATTACTCCCTCCAACACCGCCTCAACAATCAAACAACAACAAAAGGAAGGCAATGGAAGATGGACTTTCTCCAGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 810 42.47 MGSSVAAMGMVPDSKFHVLAVDDSVIDRKLIEKLLKTSSYQVTTVDSGSKALEFLGYDPGNSSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRVDLMIGNRCLEEGAEEFFLKPVQLSDVNRLRPHMLKTKLKCDKPERTTEDHPDSSQSQALEQQQQREQEQSRPLLQQIPTSLQDQDQIQSVPLLPTPLQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6751093 6752545 + Chy8G148940.1 Chy08g00289 232075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00289 269 SUPERFAMILY CheY-like 14 162 IPR011006 -
Chy08g00289 269 ProSiteProfiles Response regulatory domain profile. 17 161 IPR001789 GO:0000160
Chy08g00289 269 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 12 267 - -
Chy08g00289 269 MobiDBLite consensus disorder prediction 225 248 - -
Chy08g00289 269 SMART REC_2 16 157 IPR001789 GO:0000160
Chy08g00289 269 Pfam Response regulator receiver domain 18 152 IPR001789 GO:0000160
Chy08g00289 269 Gene3D - 17 253 - -
Chy08g00289 269 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 267 IPR045279 GO:0009736
Chy08g00289 269 MobiDBLite consensus disorder prediction 179 198 - -
Chy08g00289 269 MobiDBLite consensus disorder prediction 225 269 - -
Chy08g00289 269 MobiDBLite consensus disorder prediction 165 198 - -
Chy08g00289 269 CDD REC_typeA_ARR 18 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02547 Chy-Chr2:28742346 Chy08g00289 Chy-Chr8:6751093 8.29E-44 dispersed
Chy03g00788 Chy-Chr3:10786315 Chy08g00289 Chy-Chr8:6751093 5.80E-55 dispersed
Chy08g00289 Chy-Chr8:6751093 Chy10g01363 Chy-Chr10:17856425 6.92E-66 dispersed
Chy08g00289 Chy-Chr8:6751093 Chy10g00941 Chy-Chr10:14996171 1.56E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18392 PF00072 Response_reg 8.30E-15 CL0304 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00289 K14492 - csv:101220999 443.351