Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00351 ATGCCAAACATGGTTTCTCAGCTTCCTTGCGACGGCGATGGCATTTGCATGCTTTGTCAGTCTAAACCTTCCGACTTGGAAACCATCACTTGCAAAACCTGCGTCACTCCTTGGCATGTCCCTTGCCTCTCAAACCCCCCTGAAACCCTAGAATCTACTCTTCAATGGGACTGTCCCGACTGTTCACTCCCTTCTCAGGATGCATTCCTTCCTCCCCCTTCCAATTCTCCACTCCCCATTAACCCTTCTAATGATCTCATTTCTGCGATTCGTGCCATTGAAGCTGATTCTTCCCTTGCTGACTCCGACAAGGCAAAGAAACGCCAGCAGCTGCTTACTGGAAACTCACTCTCCCATGAGATCAATGATGTTAACAGAAAACAAGGGGACGATGTTTTGGATTTGTTTGATGAGAGGTTGAACTGTTCTTTCTGCATTCAGTTACCGGATAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCACTAAAATGGCAAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCCAAATTGTCAAAATCATCTGTTTCTGGAGGACCACAGAAGGCTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCCGACCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTTTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGCCAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGAAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGCTATCCTGTTAGAGTTGTTAGATCTCACAAAGAAAAACGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGAAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGATCATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTAAAAAAAGCAACAAATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAAAAAGATAGCCAGTGGAAATGGAGCAAACCTCCCCCAACGAGCACGAGATCAGTAGAAACCGAAGATCCTGCCACTGGGAAGAGGTCTAGGAGAAAAATCAGGCAATCGCACAACATGAATGTACGGGAAAGGTTATTGAAAGAGTTTAGCTGCCTTATATGTCGAGAGGTGATGAGTATGCCAATTACTACGCCGTGTGCCCATAACTTCTGCAAGTCATGCCTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGAAGTCTTAGATCACGAAAGAATGTCATGGCTTGTCCTTGTTGCCCGACAGATATATCTGATTTTCTTCAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCCTTGAAAGGTAAGCTTGAAGAAGAAGGGGATGCATCTGAGAAGCTTTGTGAAGAAGAGATAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAAGGTGAAGTGGAAAATAGAAAACAAGCAAAGGTGGCGGTTAATGGTGGGGAGGAAAATCCTGTCATTTGA 1944 45.01 MPNMVSQLPCDGDGICMLCQSKPSDLETITCKTCVTPWHVPCLSNPPETLESTLQWDCPDCSLPSQDAFLPPPSNSPLPINPSNDLISAIRAIEADSSLADSDKAKKRQQLLTGNSLSHEINDVNRKQGDDVLDLFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPTKMASQPRINSTLVVAIRMAKLSKSSVSGGPQKAYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDDHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSQWKWSKPPPTSTRSVETEDPATGKRSRRKIRQSHNMNVRERLLKEFSCLICREVMSMPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIESLKGKLEEEGDASEKLCEEEIDEEEEEEEEEGKGEVENRKQAKVAVNGGEENPVI* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8308833 8316662 - Chy8G149560.1 Chy08g00351 232137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00351 647 CDD RING-HC 142 180 - -
Chy08g00351 647 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Chy08g00351 647 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 635 IPR045134 -
Chy08g00351 647 SUPERFAMILY PUA domain-like 244 440 IPR015947 -
Chy08g00351 647 MobiDBLite consensus disorder prediction 426 440 - -
Chy08g00351 647 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Chy08g00351 647 Pfam RING-type zinc-finger 514 549 IPR027370 -
Chy08g00351 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 208 IPR013083 -
Chy08g00351 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 601 IPR013083 -
Chy08g00351 647 SMART PHD_3 15 62 IPR001965 -
Chy08g00351 647 SUPERFAMILY RING/U-box 133 188 - -
Chy08g00351 647 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Chy08g00351 647 Gene3D - 241 437 IPR036987 -
Chy08g00351 647 SUPERFAMILY RING/U-box 507 595 - -
Chy08g00351 647 SMART G9a_1 265 422 IPR003105 -
Chy08g00351 647 Pfam SAD/SRA domain 273 421 IPR003105 -
Chy08g00351 647 SMART ring_2 142 180 IPR001841 -
Chy08g00351 647 SMART ring_2 514 570 IPR001841 -
Chy08g00351 647 MobiDBLite consensus disorder prediction 426 497 - -
Chy08g00351 647 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 5 635 - -
Chy08g00351 647 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Chy08g00351 647 MobiDBLite consensus disorder prediction 447 469 - -
Chy08g00351 647 MobiDBLite consensus disorder prediction 605 624 - -
Chy08g00351 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 70 IPR013083 -
Chy08g00351 647 MobiDBLite consensus disorder prediction 601 647 - -
Chy08g00351 647 ProSitePatterns Zinc finger PHD-type signature. 16 61 IPR019786 -
Chy08g00351 647 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Chy08g00351 647 ProSiteProfiles Zinc finger PHD-type profile. 13 64 IPR019787 -
Chy08g00351 647 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00351 Chy-Chr8:8308833 Chy10g00009 Chy-Chr10:219737 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00351 K10638 - csv:101220457 1284.63