Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00384 ATGACTGATATGATGGTAAAGGAAAATTTGGTGCAGAGAGTAGATGACGTGGCTAAAGCGAATGATTGTTCAACTATTGGGAGTGAAGATTTGGGTTCTCAGTCTCGCCATAGTATAGGGAAGGAATCTGGGGCCAGTTGTCGTGTGTGCCAATGTGTTGAATCTGACAGAAGAGGTGATGCGGTTTTAGGATTTCTTGGTATCAGTCCTCCAATTATGGAAGCGAGAAAATGGGATGGGGATCGGGATTCTAAGCCTGAGAAGCAGAGTACAGAAAATGTTGACGGTGGTTCTATGCTAAAAAAAGATGTTAAAGGGGATTCGGGTTCAATTAAGTTCATAGGGCCTAATGGGGAGGTTTTCATTTGCAAAACTGATATTGAAATGGGTTCATGTCATCATGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTTAGCCATGGTTCTACAGTTTGTGAAATCTGTGGATGTATTGCGGAAAATATTAGAACCGACGACTTTAGGAAGGTTGTGAGTTCTTTGAAAGAATACGAAGCTTTAAGAGAGAGAACTGTTAGTGGGGTACCTAATCCTATGCAGACTACTGCTAGTACTGATATTGATCCTGATGCCGTTGCGGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCGTTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAACTTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTTCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTTGTGAGTATAATGCATTATTTTTGCCCTGACCCTGCTCTTCTGGCATTTAGTTTTATTATTGGAATCAATTTTATTCATTAG 1068 42.7 MTDMMVKENLVQRVDDVAKANDCSTIGSEDLGSQSRHSIGKESGASCRVCQCVESDRRGDAVLGFLGISPPIMEARKWDGDRDSKPEKQSTENVDGGSMLKKDVKGDSGSIKFIGPNGEVFICKTDIEMGSCHHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTVSGVPNPMQTTASTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTATSQVVSEHLNTISENVVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFVSIMHYFCPDPALLAFSFIIGINFIH* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9038388 9041463 - Chy8G149890.1 Chy08g00384 232170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00384 355 Pfam RING-variant domain 135 172 IPR011016 GO:0008270
Chy08g00384 355 PANTHER ZINC FINGER, RING-CH-TYPE 4 330 - -
Chy08g00384 355 MobiDBLite consensus disorder prediction 76 99 - -
Chy08g00384 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 181 IPR013083 -
Chy08g00384 355 ProSiteProfiles Zinc finger RING-CH-type profile. 115 179 IPR011016 GO:0008270
Chy08g00384 355 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 330 - -
Chy08g00384 355 SUPERFAMILY RING/U-box 136 174 - -
Chy08g00384 355 SMART ringv_2 132 173 IPR011016 GO:0008270
Chy08g00384 355 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00384 Chy-Chr8:9038388 Chy04g02201 Chy-Chr4:26953978 2.18E-08 dispersed
Chy08g00384 Chy-Chr8:9038388 Chy12g00249 Chy-Chr12:2769552 2.27E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00384 - - csv:101218157 638.647