Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00387 ATGGGGAGAGTTAAATTGCAAATCAAAAGAATTGAAAATACAACAAATCGACAAGTAACTTTTTCAAAACGAAGAAATGGACTCATCAAGAAGGCTTATGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCTGGCCGCCTCAGCCAGTTCTCCGGTCGCCGCAGAATTGAGGACGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTATTAGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACTTACCAATCCTACATCTAGCAACTCCAATGTTGAGGAACTTCAACAAGAGGTTGGTACACTGAGACACGAGCTTCAACTTGCTGAGCAACAACTCAGGTTATTTGAACCTGATTTTCTTTCATTCACATCAAATGGTGAAATAAATTCTTGTGAGAAAAATCTTTTAGACACTTTGGCGCGAATCACCCAAAGGAAGAAAGATTTATTAAGCACTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAACCTCTTTTGAAAGCGATGTTGGTCATTGGTTGCCAGAAAATAATGGACAAAATAATCCAAACCAAATTTGTGTTGCTTCTGAATCATCTTCCATCCCTCAAAGTGGGCAGTATCCAACAGCGACAGTATATGATCAAGTAGTATCACAAGCAGCAGCAGGAACAAACATAAACGTTGGCGTTGGCGTTGGCGTTGGTGGCTATGACATTGCAAATGCCAACGATGACGGTTTCTCCCCATGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCTCAAACTTCTTTTGATGTTGTCAAGAATGAAATTGGGGAGGCTTGTATGAATACAATGGTACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAATTATGATAATGTCAAGTTGTCTCAACTCAATGTGGATTAA 1044 39.08 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQLTNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNGEINSCEKNLLDTLARITQRKKDLLSTHLSPYEPPNGIQIYLDQQDGIPTSFESDVGHWLPENNGQNNPNQICVASESSSIPQSGQYPTATVYDQVVSQAAAGTNINVGVGVGVGGYDIANANDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKNEIGEACMNTMVPQQQVDSISNGNQMPPSDGSANYDNVKLSQLNVD* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9207875 9211241 + Chy8G149920.1 Chy08g00387 232173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00387 347 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 313 - -
Chy08g00387 347 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Chy08g00387 347 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Chy08g00387 347 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 Coils Coil 114 134 - -
Chy08g00387 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 MobiDBLite consensus disorder prediction 319 339 - -
Chy08g00387 347 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Chy08g00387 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00387 - - - csv:101222576 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01315 Chy-Chr7:17798957 Chy08g00387 Chy-Chr8:9207875 2.68E-13 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy09g00018 Chy-Chr9:204900 5.57E-26 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy12g01534 Chy-Chr12:19058921 1.79E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18399 PF00319 SRF-TF 1.10E-25 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g00387 Chy_Chr08 FPKM 12.592475 13.717928 28.028368 27.079901 42.173923 35.506134 44.686184 29.824478 28.95244 28.68222