Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00387 ATGGGGAGAGTTAAATTGCAAATCAAAAGAATTGAAAATACAACAAATCGACAAGTAACTTTTTCAAAACGAAGAAATGGACTCATCAAGAAGGCTTATGAACTCTCTATTCTATGTGATATTGATATTGCTCTTATTATGTTCTCTCCTTCTGGCCGCCTCAGCCAGTTCTCCGGTCGCCGCAGAATTGAGGACGTGCTTGCTCGTTATATAAATCTGCCTGATCATGATAGAGGAAGCGTTGTTCAGAATAAAGAGTTTTTATTAGGAACGCTAAATAATTTGAAGACAGAGAATGATATTGCACAACTTACCAATCCTACATCTAGCAACTCCAATGTTGAGGAACTTCAACAAGAGGTTGGTACACTGAGACACGAGCTTCAACTTGCTGAGCAACAACTCAGGTTATTTGAACCTGATTTTCTTTCATTCACATCAAATGGTGAAATAAATTCTTGTGAGAAAAATCTTTTAGACACTTTGGCGCGAATCACCCAAAGGAAGAAAGATTTATTAAGCACTCATTTATCTCCTTATGAACCTCCAAATGGGATTCAGATATATTTGGATCAACAAGATGGAATACCAACCTCTTTTGAAAGCGATGTTGGTCATTGGTTGCCAGAAAATAATGGACAAAATAATCCAAACCAAATTTGTGTTGCTTCTGAATCATCTTCCATCCCTCAAAGTGGGCAGTATCCAACAGCGACAGTATATGATCAAGTAGTATCACAAGCAGCAGCAGGAACAAACATAAACGTTGGCGTTGGCGTTGGCGTTGGTGGCTATGACATTGCAAATGCCAACGATGACGGTTTCTCCCCATGGCATCACAACTACACCACAACTCAACTCCTCTCTTCCTTCATCCCTCAAACTTCTTTTGATGTTGTCAAGAATGAAATTGGGGAGGCTTGTATGAATACAATGGTACCACAACAACAAGTTGATAGCATTTCAAATGGAAACCAAATGCCTCCAAGTGATGGAAGTGCCAATTATGATAATGTCAAGTTGTCTCAACTCAATGTGGATTAA 1044 39.08 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIAQLTNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDFLSFTSNGEINSCEKNLLDTLARITQRKKDLLSTHLSPYEPPNGIQIYLDQQDGIPTSFESDVGHWLPENNGQNNPNQICVASESSSIPQSGQYPTATVYDQVVSQAAAGTNINVGVGVGVGGYDIANANDDGFSPWHHNYTTTQLLSSFIPQTSFDVVKNEIGEACMNTMVPQQQVDSISNGNQMPPSDGSANYDNVKLSQLNVD* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9207875 9211241 + Chy8G149920.1 Chy08g00387 232173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00387 347 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 313 - -
Chy08g00387 347 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Chy08g00387 347 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Chy08g00387 347 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 Coils Coil 114 134 - -
Chy08g00387 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 MobiDBLite consensus disorder prediction 319 339 - -
Chy08g00387 347 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Chy08g00387 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy08g00387 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01315 Chy-Chr7:17798957 Chy08g00387 Chy-Chr8:9207875 2.68E-13 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy09g00018 Chy-Chr9:204900 5.57E-26 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy12g01534 Chy-Chr12:19058921 1.79E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18399 PF00319 SRF-TF 1.10E-25 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00387 - - csv:101222576 668.692