Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00458 ATGGAGGTCGATACTAATCCTGGGAAACCGTCGAAACAGATTGGGGGCGGCCAGGTTTGTCAGATCTGCAGTGATTCCGTTGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACTAAATACAAGTGGCATAAAGGAAGTCCTCCTGTTAATGGTGAGGCAGTAGAAGATGGTGATGGCAATGGAGTGGGAGGGACACAAGAAAGGCATCATAAGATGCCAGAACGCACCCTTAGCTGGGATACTAATTATGATAAGGAGGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTGTCAGCTGCATCTCCTGAGCGGCTGTCCATGGCCTCTCCTGAAAGTGGGAGCCGGGCTAACTATAGAATCATGGATCAATCGAGAGACTCAGGATCGGCTAGGTTTGGCAATGTGGCCTGGAAGGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGTGCCGATTTTGATGCCAGCACTGATGTCGTGATCGATGATTCTTTACTAAATGATGAAGCTCGCCAGCCTCTATCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATTACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAATGGCTCCCGGTTAATCGTGAGACATATCTTGATAGGCTTGCTCTAAGATACGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACTGCCAATACGGTCCTATCAATTCTCTCTGTGGACTATCCAGTTGATAAAGTTTCTTGCTACGTGTCTGATGATGGAGCTGCTATGTTAACATTTGAAGCTTTGTCCGAAACCTCAGAATTTGCTAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTGAAGGAGCGGAGAGCAATGAAGAGAGAATACGAGGAGTTTAAAATTCGTGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCCGATGAAGGGTGGGTCATGCAAGATGGTACCCCATGGCCTGGAAATAACACAAGAGATCATCCGGGAATGATACAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGATGGTAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCTCTTGTTCGCGTATCTGCTGTTCTTACCAACGGACCGTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAGGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCAGTTTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCGCTGTACGGCTATGAGCCCCCTCTCAAGCCCAAGCATAAAAAGCCAGGGGTATTCTCCAGTTGCTTTGGGAAATCGAAAAAGAAAAGTTCTAAATCAAAAAGAAAGGATTCTGACAAGAAGCAATCTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTCGAAGATATTGAGGAAGGAGTTGAAGTCTTCTTGATGTCTTTACGCAAGTCTAACGTTCTACTTTGCACCTTGAAATGGGGTACTAATTTCCATATATCATCCAATCCAGGTGCTGGGTTTGATGACGAGAAATCACTACTAATGTCGCAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGTGTGCCGCAATCTGCCACTCCAGAATCTCTTCTTAAAGAAGCAATTCATGTCATCAGTTGTGGATACGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCCGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGCTGGAGATCAATCTACTGCATCCCAGACCGTCCTGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGTCCTGTATGGTACGGTTATGGTGGACGGTTGAAATGGCTTGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCCATATGTTTACTCACTGGAAAGTTTATCATTCCTCAGATCAGCAATCTTGCTAGCATCTGGTTCATCTCTCTCTTTCTTTCCATCTTTGCTACCGGTATTCTAGAAATGAGATGGAGTGGTGTTGGAATCGATGAATGGTGGAGAAACGAACAATTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTCGCTGTCTTCCAAGGCCTTCTTAAAGTTCTTGCTGGAATCGATACAAACTTCACGGTTACTTCGAAAGCGTCCGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGTTATCAATCTTGGGGACCCCTTTTCGGCAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACACCCACAATCGTGGTGGTATGGTCTATCCTCCTTGCCTCAATATTCTCCCTTTTATGGGTTCGGATCGATCCCTTCACAACTCGGGTAACTGGTCCTGATGTCGAACAGTGTGGAATCAACTGTTAA 3237 44.64 MEVDTNPGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVGGTQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGVFSSCFGKSKKKSSKSKRKDSDKKQSSKNVDPTVPIFNLEDIEEGVEVFLMSLRKSNVLLCTLKWGTNFHISSNPGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPVWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC* 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11169563 11174637 - Chy8G150630.1 Chy08g00458 232244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00458 1078 MobiDBLite consensus disorder prediction 623 654 - -
Chy08g00458 1078 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Chy08g00458 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 609 IPR029044 -
Chy08g00458 1078 MobiDBLite consensus disorder prediction 76 100 - -
Chy08g00458 1078 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Chy08g00458 1078 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Chy08g00458 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 16 668 - -
Chy08g00458 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 459 613 IPR029044 -
Chy08g00458 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 676 1078 - -
Chy08g00458 1078 Pfam Cellulose synthase 322 672 IPR005150 GO:0016020|GO:0016760|GO:0030244
Chy08g00458 1078 Pfam Cellulose synthase 702 1071 IPR005150 GO:0016020|GO:0016760|GO:0030244
Chy08g00458 1078 SUPERFAMILY RING/U-box 9 87 - -
Chy08g00458 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Chy08g00458 1078 PANTHER CELLULOSE SYNTHASE 676 1078 - -
Chy08g00458 1078 PANTHER CELLULOSE SYNTHASE 16 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01864 Chy-Chr1:24061213 Chy08g00458 Chy-Chr8:11169563 0 dispersed
Chy04g00357 Chy-Chr4:3161093 Chy08g00458 Chy-Chr8:11169563 0 dispersed
Chy08g00458 Chy-Chr8:11169563 Chy11g01862 Chy-Chr11:24856924 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00458 K10999 - csv:101211779 2115.12