Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00517 ATGAACGACTTAATGACCAAATCGTTCACAAGCTATGTGGATCTGAAGAAGGCAGCCATGAAGGATCTCGACCTTGAAGCCGGTCTAGAAAAGGCATCATCTGTTACCGGCGACAACGGTGACATGGGTCTGTTTCTGGAAGAGGCAGAGAAGGTGAAAATGGAGATGGGTTCGATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAATGAAGAGACCAAATCTGCTCACAAACCTGAAACCCTCAAATTGCTTCGTAATGCGATCAATGTCGACATTGTCACTGTCCTCAAAAAGGCAAGATCTATCCGATCTCAGCTTGAGGAAATGGATCGTGCCAACGCTGCCAAGAAACGTCTCTCCGGAAGCAAAGAAGGCACTGCCATTTACAGGACAAGAATTGCAGTGACCAACGGGCTACGGAAGAAGCTAAAGGAATTAATGATGGAGTTTCAAAGCTTGAGGCAGAGGATGATGACGGAGTACAAAGAAACGGTTGGGCGCCGATACTTCACGGTGACGGGGGAGAATCCGGAGGAGGAGGTAATAGAGAAGATAATATCGAATGGAGGGGAGGAGTTTTTAGCAAGGGCAATAGAGGAGCATGGGCGAGGGAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGACACGGGGCCGCGAAGGAGATAGAGAAGAGCTTGTTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTCATGGTTGAAGCACAAGGGGAGAAAATGGATGATATTGAACATCACGTTATGAATGCTTCGCAATATGTTATAGATGGGACCAAGGATTTGAAAACAGCAAAGGATTTGCAAAGGAATAGTAGAAAATGTTTGTGTTTTGGGATTTTCCTTTTGCTTGTGATTATTTTGGTTGTTGTTATTCCAATTGCTGTTAGTTTTGGAAGTTCTTGA 930 45.16 MNDLMTKSFTSYVDLKKAAMKDLDLEAGLEKASSVTGDNGDMGLFLEEAEKVKMEMGSIREILVKLQQANEETKSAHKPETLKLLRNAINVDIVTVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGENPEEEVIEKIISNGGEEFLARAIEEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVIDGTKDLKTAKDLQRNSRKCLCFGIFLLLVIILVVVIPIAVSFGSS* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12391637 12392764 - Chy8G151220.1 Chy08g00517 232303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00517 309 PANTHER SYNTAXIN 4 302 IPR045242 -
Chy08g00517 309 CDD SNARE_syntaxin1-like 210 272 - -
Chy08g00517 309 SMART tSNARE_6 206 273 IPR000727 -
Chy08g00517 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Chy08g00517 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020
Chy08g00517 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy08g00517 309 CDD SynN 42 198 IPR006011 GO:0016020
Chy08g00517 309 Pfam SNARE domain 248 299 IPR000727 -
Chy08g00517 309 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 302 - -
Chy08g00517 309 Gene3D - 37 166 - -
Chy08g00517 309 SMART SynN_4 37 163 IPR006011 GO:0016020
Chy08g00517 309 Coils Coil 137 157 - -
Chy08g00517 309 Gene3D - 206 307 - -
Chy08g00517 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00640 Chy-Chr2:3907457 Chy08g00517 Chy-Chr8:12391637 2.93E-73 dispersed
Chy08g00517 Chy-Chr8:12391637 Chy12g00974 Chy-Chr12:15035977 3.10E-92 dispersed
Chy08g00517 Chy-Chr8:12391637 Chy04g01850 Chy-Chr4:24681494 4.23E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00517 K08486 - csv:101220775 557.37