Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00534 ATGGCAGAATTAGATCAAGTAGTTGACCCTCCTCCCTATTTTCTCTGTCCCATCTCCTTGCAAATCATGAAAGATCCTGTTACAATAGCCTCTGGCATAACCTATGACCGCGAAAGCATCGAGAAATGGTTGCTTTCTGACAAACACAACACATGCCCCGTCTCACACATAGTTTTGTCAGACTTCGACATCACTCCCAACCATACTTTAAGACGAGTCATTCAAGCTTGGTGCACTGTCAATGCTTCTAAAGGCGTAGAGAGGATACCGACGCCGAAGCCCCCAGTCGATCGGGAGCAAGTCGTTCGGATTCTTGCCGATGCTAAGTTATCTCCATTCTCTCAAAAGAATTGTCTTTGTCGCCTTCGATCTATTGCTACGGCAAATGAAAGTAATAAACGTTGCATGGAATCTGCTGGAGTTGTGGAGTTCTTGGCTGGGGTTGTGTGTAATAATTCTACCACCAACATGGAGTATGGCTTAGAAGATTACGCGTTTGACGACATGTCGGCAAATTCAGCCGATGAGGCTTTGCTCATTCTTCACAAACTCCAAATCTCCGAATCCTCTCTAAAATTTCTCCTCTCCAACAATGGCGGCATCTTCATCTCCACTTTAACCAAAATCTTACAAAACCGAAGCTATTCCTCTAGATCATATTCAGTAATGCTTCTTAATTCAATGTTCGAAGTCGCAGATCGGATTCAAATCCAAAATCTCACCGCCGATTTCTTCACCGAAATCATCCAAATCCTCAAAGATCAGATATCCAAACAAGCCTCCAAATCGGCATTGAAATTGCTAATCGCCGTCTCTTCTAGTTTCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTTCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCATCGGAGAATAAGCGTTTGTGCGAAATGATTCTCGTACTGCTCGATCTGCTTTGTAGCTGTGCCGATGGCAGGGCGGAGCTGTTGAACCATGCGGCGGGGATCGCCGTGGTGTCGAAGAAGATTCTGAGAGTTTCGTCGGTTGGAAGTGAGAAAGCGGTTGGGATCTTGTGGTCTGTTGTGAAATTCTCGGGGAGTCAAAGCGTGGTTCAGGAAATGGTGCGGATTGGTGTTGTGACGAAGCTTTGTTTTCTGCTTCAGGTGGTGGGGGCCGGAGTGAAAGCGAAGGAGAAAGCTAAAGAGATTTTGAAGCTTCATGGTCGGACATGGCGGAATTCCTCGTGTTTGCCTTCGACTTTGCGATCAGCTTATCCACAATAA 1275 46.2 MAELDQVVDPPPYFLCPISLQIMKDPVTIASGITYDRESIEKWLLSDKHNTCPVSHIVLSDFDITPNHTLRRVIQAWCTVNASKGVERIPTPKPPVDREQVVRILADAKLSPFSQKNCLCRLRSIATANESNKRCMESAGVVEFLAGVVCNNSTTNMEYGLEDYAFDDMSANSADEALLILHKLQISESSLKFLLSNNGGIFISTLTKILQNRSYSSRSYSVMLLNSMFEVADRIQIQNLTADFFTEIIQILKDQISKQASKSALKLLIAVSSSFRNRVKAVQAGAVSVLIDLLLDLDSSENKRLCEMILVLLDLLCSCADGRAELLNHAAGIAVVSKKILRVSSVGSEKAVGILWSVVKFSGSQSVVQEMVRIGVVTKLCFLLQVVGAGVKAKEKAKEILKLHGRTWRNSSCLPSTLRSAYPQ* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12687813 12689229 - Chy8G151390.1 Chy08g00534 232320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00534 424 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842|GO:0016567
Chy08g00534 424 SUPERFAMILY ARM repeat 101 385 IPR016024 -
Chy08g00534 424 Gene3D - 98 410 IPR011989 -
Chy08g00534 424 SUPERFAMILY RING/U-box 7 84 - -
Chy08g00534 424 SMART Ubox_2 13 77 IPR003613 GO:0004842|GO:0016567
Chy08g00534 424 PANTHER WDSAM1 PROTEIN 8 423 IPR045185 GO:0061630
Chy08g00534 424 Pfam U-box domain 11 80 IPR003613 GO:0004842|GO:0016567
Chy08g00534 424 CDD RING-Ubox_PUB 14 56 IPR045210 -
Chy08g00534 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
Chy08g00534 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 8 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01856 Chy-Chr4:24750355 Chy08g00534 Chy-Chr8:12687813 8.41E-91 dispersed
Chy06g00286 Chy-Chr6:1909392 Chy08g00534 Chy-Chr8:12687813 7.79E-64 dispersed
Chy08g00534 Chy-Chr8:12687813 Chy11g01952 Chy-Chr11:25559004 2.49E-60 dispersed
Chy08g00534 Chy-Chr8:12687813 Chy05g00202 Chy-Chr5:1692654 5.44E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00534 - - csv:101205757 768.844