Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00540 ATGGAGAAGTACGAGAAGCTCGAAAAAGTCGGTGAAGGAACTTACGGTAAGGTCTACAAGGCCAAAGACAAAGAAACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTCGAAATGGATGAAGAAGGCGTTCCACCAACCGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAATCCCTCTATGTCGTTCGTCTTCTCTGTGTTGAGCATGTTCATCACCATAAGAGTGGTAAACCTCTTCTTTACCTTGTGTTTGAGTATCTCGACACTGATCTCAAGAAGTACATTGATTCGCATCGGAAAGGTCCCAATCCTAGGCCTCTTCCTTCCTCTCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGTGTTGCGCATTGTCATAGTCATGGTGTTCTTCACCGTGATCTCAAGCCCCAGAATCTACTTCTCGATCAGGGTAAAGGTGTTTTGAAAATTGCTGATCTTGGCCTTGGTCGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGATCTACACATTACTCCACTGCTGTCGATATGTGGTCTGTTGGCTGCATCTTCGCTGAAATGGTGAGAAGGCAGGCACTTTTCCCCGGAGATTCTGAGTTCCAGCAATTGCTTCACATTTTCAGGTTCGTGTTCGACGTTTTGTCTCATAGGCTGCTAGGTACACCCAGTGAGAAACAATGGCCTGGAGTTAGCTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTTACACGTGCAGTTCCATCCTTGGAACCCGAGGGTGTTGACCTTCTCTCGAAAATGCTTCAATATAATCCAGCAGACAGAATCTCAGCTAAAGCAGCTCTTGACCATCCATATTTCGATAGCCTCGACAAGTCTCAGTATTAA 945 45.82 MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRFVFDVLSHRLLGTPSEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSKMLQYNPADRISAKAALDHPYFDSLDKSQY* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12919239 12922024 + Chy8G151450.1 Chy08g00540 232326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00540 314 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Chy08g00540 314 SMART serkin_6 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00540 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Chy08g00540 314 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Chy08g00540 314 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Chy08g00540 314 PANTHER CELL DIVISION PROTEIN KINASE 1 314 - -
Chy08g00540 314 Gene3D Transferase(Phosphotransferase) domain 1 92 314 - -
Chy08g00540 314 ProSiteProfiles Protein kinase domain profile. 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00540 314 Pfam Protein kinase domain 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00540 314 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00426 Chy-Chr7:3293583 Chy08g00540 Chy-Chr8:12919239 3.70E-148 dispersed
Chy08g00540 Chy-Chr8:12919239 Chy10g01254 Chy-Chr10:17096948 1.34E-117 dispersed
Chy09g00649 Chy-Chr9:8371187 Chy08g00540 Chy-Chr8:12919239 5.53E-14 dispersed
Chy08g00540 Chy-Chr8:12919239 Chy03g01669 Chy-Chr3:18451766 2.30E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71427 PF00069 Pkinase 5.90E-66 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00540 K07760 - csv:101204557 600.512