Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00549 ATGTTAGGGTCAAATTTTTCGTATGTTGTTGAATTGATTGTCAAGAATGTTATGATGATTAGGGTTAGGCCATTCACCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGGGCTGCTTCCACCAGTGGTAGTTCAAGAAGGTTTGGAATGTTAGCTGCCTCAAATATTATTCAGGCTCCGCTTTCTGCACTATTAGAGTATTCGGGTCTTCTTCGTGGCCGTCAAAGTCATCAAGAATCAGAGGCATTGATAAGTGCTCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCATATTGAAGAATCTTCGGGTGCCACCAATGATGGAGAGCTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTAGGCAAGCGAGGGATGTTAGCAGTCAGAATGCGGTGTCTTTGCAATCTGTTTCAGGGTTGGCCTCTGTGACCTTGGGGTCGGAGCTTAGCCAGGGTGAGTCTGTCAATGAACGTGGTGCAAGAGAGGGTATTCCTGAATCGATAAATGCAGGTGCTGATGGAGATGCCTCGGAGGCAGCTGGAGGAAATAGCAGGGATTCTTCTTATCAGAGATATGACATTCAACAGGCTGCTCGGGGGATTGAACAGATACTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGCTTCTTTGTGACAATATGGATTGCTGCCTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGAGAGAGAAAAATTTCTATTTTGGTTTGCATTTCTCTTGCGTTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCGTTGATCATGTGTCCTCCCAGAGCGATTCCTCCTTTCTGGCATGCTATTTTCATCATTATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGGTCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGTCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTGGTCGAATATTTGCTACTGCTGTACCGTGCCTTATTGCCTACTCCTGTTTGGTATCGTTTCTTCTTGAACAAAGAGTATGGGAGTCTATTTTCGTCACTATTGACGGGACTGTACTTAACTTTCAAACTCACATCGGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCGTATGCAACATCAGAGCAGGTCAGCGCAGCAGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTTCTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAATGGTTTGAGCGGGAACGGACATGTCCATTGTGTAGGGCATTGGTTAAACCCGCAGATCTCAGGTCATTTGGTGATGGATCAACAAGTTTGTTTTTCCAGGTTTTCTAA 1497 44.49 MLGSNFSYVVELIVKNVMMIRVRPFTRMEGSGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALISARLPSGFRDHLRSHIEESSGATNDGELSIRIIGAGEPEHGRDGAGLVVRQARDVSSQNAVSLQSVSGLASVTLGSELSQGESVNERGAREGIPESINAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISILVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQAVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13038906 13045942 - Chy8G151540.1 Chy08g00549 232335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00549 498 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 28 498 - -
Chy08g00549 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 485 IPR013083 -
Chy08g00549 498 CDD RING-HC_RNFT1_like 436 475 - -
Chy08g00549 498 Pfam Zinc finger, C3HC4 type (RING finger) 435 478 - -
Chy08g00549 498 SUPERFAMILY RING/U-box 432 480 - -
Chy08g00549 498 ProSiteProfiles Zinc finger RING-type profile. 437 475 IPR001841 -
Chy08g00549 498 SMART ring_2 437 474 IPR001841 -
Chy08g00549 498 MobiDBLite consensus disorder prediction 166 202 - -
Chy08g00549 498 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 28 498 IPR044235 GO:0061630|GO:1904294
Chy08g00549 498 ProSitePatterns Zinc finger RING-type signature. 452 461 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00549 Chy-Chr8:13038906 Chy10g00294 Chy-Chr10:7467769 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00549 - K22379 csv:101205267 905.205