Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00556 ATGCCGTCGATGTGGAGGGATTGTGTGTGCGTGTTTCTGCTCTTGTGCTGTTCATCCATACTTCTTGCTGGTGCTGCTAAAACAGAGCCATCTGATGTTAAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCTATGGACCAGCTTATCAGTTGGAGTAAAGGAGATCCTTGCAAAGATAACTGGATTGGAGTAGTATGTTCTGGTGGAGCTGTCGGGAACTTACGTGTCAAAGAAATCCAGCTATTGAATAAAAACCTATCTGGAAATTTAGCTCCTGAGATCAGTCAATTGTCAGCGCTTGAGAAGTTAAATTTCATGTGGAATGACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATGATGTCGCTGAAACTTTTACTCCTAAATGGAAATAAGCTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTGTAAACCTCATCCGGCTCCAAATAGACGAGAATCGAATTTCAGGGCCTATCCCAAAATCATATGCTAACTTGACCAGTCTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACATGCTTGTAGATAACAATAATTTGTCGGGTTCTCTGCCACCAGAACTTTCGACCATGCCAATGCTACTTATTCTACAACTTGATAGCAACAACTTCGAAGGGGAAATTCCAGCATCTTATGAAAATTTTCCTGAATTAGTGAAATTAAGTCTAAAGAATTGCAGTTTGAAGGGGCCGATTCCTAATTTTAGCAAGTTAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACTCATACCCCCTTACAACCTCTCTTCTAGAATGACAACATTAATTTTGTCAAACAACCAGCTGAATGGATCAATACCCAGAAGTTTCTCCAATCTCCCTATCCTCCAGAAACTGTCACTCGAGAATAACTTTCTGAATGGTTCTGTATCTTCTGCTCTATGGGAGAAAATGTCCTTCGATTCAAGTGACCGACTTACACTCGATCTTCAGAACAATTCGTTTTCTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGGCTCGGAGGGAATCCAATCTGCAAAAATCTGAGTGGACAAAACACTGACAAGTTCTGTAAGTCAAAAAATGTAGAGGATGGGCTTCATAGAAGTTCAAGGAGTTCCAGTAAAACATGTCCAGTTAGCAATTGTCCAACTGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGTTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAAAGTCCAAGTTTTTCCTACTTTCCTCCATACATGAATTCATTTGAAGCGTATCTGTCTAAGGAACTCAGTTTGGTGAAGCATCAATTGTTAATCGATTCGTATGATTGGGAGGGTTCTCGCTTGAGGATGTATCTGAAGATTTTTCCATCATTCGATAGTGGTACTCATAAATTGGATGTAAATGAGACATTTCTAATTACAGAGCAATTTATGTCGTGGAATTTTACCCGTAATAACGTGTTTGGCCCGTACGAGCTTCTCAACTTCACATTCCCTGACCATTTTCAGACTGTCATTTTCCAGACAGAGAAGATGGGCATTAGTACGGGCGCCACGGTTGGCATTATAGTTGGATCTGCTTTTTGTATTCTTGTGATCGTTGCAGTTACTGTACTTCTGTTCACTAGGCATTCTAGATACCGTCACAACTTGTCAAGGAAAAATCTCTCTTCAACAATTAATCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAGGACATGCAATTGGCTACTGGAAATTTCATCCACTCAAGTCAAGTTGGCCGAGGAGGTTATGGCAAGGTCTATAAAGGCATACTATCAGATAATTCTGTTGTAGCCATCAAGCGTGCAGAAAAAGGATCCTTACAAGGCCAAAAAGAATTTTTGACCGAGATAAAACTCTTATCACGGTTGCATCACCGAAACTTAGTATCCCTAATGGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTATATGAGTTTATGCCGAACGGAACTTTACGGGACTGGCTTTCTAGTTTTGAATTTTCAGACAAAAGTACATCAACAGTAAGTCTGAATTTTCGTATGAGATTACGAATTGCACTGGGTTCAGCTAAAGGTATTCTGTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTTCTCGATGCTAAGTTCACAGCTAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCGGATCTAAATTACGAGGGGGACGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTTCTAACCCATAAACTGACGGACAAAAGTGATGTCTATAGCCTTGGAGTTGTATTCTTGGAGCTCTTAACGGGAATGCACCCTATTCAGCACGGCAAAAACATTGTCCGTGAGGTCAAATTGACTCATCAAATGGGAACAGTTCTTTCAATTGTAGACTCAACGTTGGGTTCTTTCGCACCTGATTGTTTAGAGAGGTTTGTTGCTTTAGCCATCAGTTGTTGCCATGACAATCCCGATGAACGGCCGTCCATGCTGGTTGTGGTGAGGGAGTTGGAGAACATATTGAACATGATGCCTGACGATAGTGGCACATTGTATTCAGACTTGTCAACGAAATCAAGTGCCAGACTTCCATCCTCACCGACATCAACGTCTGGCTTCAGCCGGGATCATTTTGCATCGGGAAGCATTTCAGGGAGCGATCTCATCAGTGGTGTCATGCCAACCATCAGACCTCGGTGA 2874 41.58 MPSMWRDCVCVFLLLCCSSILLAGAAKTEPSDVKALLAVKRSLIDPMDQLISWSKGDPCKDNWIGVVCSGGAVGNLRVKEIQLLNKNLSGNLAPEISQLSALEKLNFMWNDLTGSIPKEIGSMMSLKLLLLNGNKLSGSLPDELGNLVNLIRLQIDENRISGPIPKSYANLTSLKHLHFNNNTLSGEIPSELSKLPKLIHMLVDNNNLSGSLPPELSTMPMLLILQLDSNNFEGEIPASYENFPELVKLSLKNCSLKGPIPNFSKLANLSYLDLSWNHFTGLIPPYNLSSRMTTLILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVSSALWEKMSFDSSDRLTLDLQNNSFSDISGSTNPPANVTLRLGGNPICKNLSGQNTDKFCKSKNVEDGLHRSSRSSSKTCPVSNCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMNSFEAYLSKELSLVKHQLLIDSYDWEGSRLRMYLKIFPSFDSGTHKLDVNETFLITEQFMSWNFTRNNVFGPYELLNFTFPDHFQTVIFQTEKMGISTGATVGIIVGSAFCILVIVAVTVLLFTRHSRYRHNLSRKNLSSTINLKIDGVKAFSFKDMQLATGNFIHSSQVGRGGYGKVYKGILSDNSVVAIKRAEKGSLQGQKEFLTEIKLLSRLHHRNLVSLMGYCDEEGEQMLVYEFMPNGTLRDWLSSFEFSDKSTSTVSLNFRMRLRIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLNYEGDVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPIQHGKNIVREVKLTHQMGTVLSIVDSTLGSFAPDCLERFVALAISCCHDNPDERPSMLVVVRELENILNMMPDDSGTLYSDLSTKSSARLPSSPTSTSGFSRDHFASGSISGSDLISGVMPTIRPR* 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13120571 13133989 - Chy8G151610.1 Chy08g00556 232342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00556 957 ProSiteProfiles Protein kinase domain profile. 619 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00556 957 SUPERFAMILY Protein kinase-like (PK-like) 604 924 IPR011009 -
Chy08g00556 957 Gene3D Transferase(Phosphotransferase) domain 1 695 912 - -
Chy08g00556 957 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Chy08g00556 957 Gene3D Ribonuclease Inhibitor 182 287 IPR032675 -
Chy08g00556 957 CDD STKc_IRAK 625 898 - -
Chy08g00556 957 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 927 - -
Chy08g00556 957 Pfam Protein kinase domain 622 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00556 957 Gene3D Phosphorylase Kinase; domain 1 590 694 - -
Chy08g00556 957 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 7 927 - -
Chy08g00556 957 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Chy08g00556 957 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Chy08g00556 957 MobiDBLite consensus disorder prediction 913 935 - -
Chy08g00556 957 SUPERFAMILY L domain-like 50 379 - -
Chy08g00556 957 SMART serkin_6 619 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00556 957 Gene3D Ribonuclease Inhibitor 288 412 IPR032675 -
Chy08g00556 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01632 Chy08g00556 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01362 Chy-Chr4:20290431 Chy08g00556 Chy-Chr8:13120571 7.10E-97 dispersed
Chy08g00556 Chy-Chr8:13120571 Chy07g00748 Chy-Chr7:8041214 2.64E-70 dispersed
Chy04g02327 Chy-Chr4:27652424 Chy08g00556 Chy-Chr8:13120571 1.88E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71428 PF00069 Pkinase 1.70E-46 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00556 - - csv:101210187 1838.54