Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00561 ATGAGGCTACAATCCTTTCTTGCAGCATCATCTTTACTCTTACTCATTTATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCAGGAAGCTCTTTTGGATTTTATTTCATCAGTTCCCCATGGTCGAAAAATTAACTGGGATTCTTCTACCCCGGTCTGCACTACTTGGGTTGGCGTCACTTGCACTTCAGACCTCGCAAATGTGCTTGCTCTCAGATTGCCTGCAATTGGACTGTATGGTCCAATCCCGGCCAATACTCTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTTTGTATCTTCAACGCAATAACTTTTCTGGTAAGGTGCCTTCTTCCCTCTCTCCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACTGGAAACATTCCAAAATCGGTACAAAATTTAACACACCTCACTGGGCTCAACGTTCAAAACAACTCCCTGAATGGATCCATCCCTGATATCGGTCACCTAAGGCTTAAGCAATTGAACTTGAGCTACAACAAGCTTAGTGGTCCCATTCCTGCTTCACTGCAGTCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCACCTTTGAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCATCGCCTGCTTCGTTGCCCCCGCCAAAGAAAAAGAGTGAAAAGAAAATAAATATTGGAGCTATCGTTGCTATTGGCTTAGGTGGTGCTGCCGTGCTCTTCCTCCTTGTGGTGTTGATTGTTGTCTGTTGTATGAAAAAAAAAGATGGTGAAAGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGTGGGGTACAAGAGCCTGAGAAAAATAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCCTCTGCGGAAGTACTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAAGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAGATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGACGAGAAGCTTTTGGTTTATGACTATGCCATTGCTGGAAGCTTTTCGGCACTACTCCGTGGAAGTCGAGAAGGCGGGCGAGCACCACCAGACTGGGAAACAAGATTGAAGGTTTCACTGGGGTGTGCCAAAGGTCTTGCACATATTCATTCAGCAAGTGGGGGAAAATTCATCCACGGGAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGTATTTCAGATTTTGGCTTGACTCCTTTGATGAACTCCCCTGCCATTCCCTCTAGAAGCGTAGGTTATCGTGCTCCGGAGGTAATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTTTACAGTTTTGGAGTCGTTTTGCTAGAGATGTTGACTGGGAAAGCGCCATCCCAATCGCCAGGCCGTGATGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTAGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGCTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTGCAAATAGCAATGGCTTGCGTGTCTCGAGTACCGGATATGAGACCAACAATGGACGAAGTTGTTAGGATGATCGAGGAAATTCGATCATTAGACTCGGGAACTCGACCATCATCAGAAGATAACAAAGCCGGGGAAGGGGAAGGGGACGATGACTTGAATACTCAGACCATGTAA 1911 45.0 MRLQSFLAASSLLLLIYFLSFIAADLNSDQEALLDFISSVPHGRKINWDSSTPVCTTWVGVTCTSDLANVLALRLPAIGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFLYLQRNNFSGKVPSSLSPSLTFLDLSFNSLTGNIPKSVQNLTHLTGLNVQNNSLNGSIPDIGHLRLKQLNLSYNKLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPASLPPPKKKSEKKINIGAIVAIGLGGAAVLFLLVVLIVVCCMKKKDGESSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAIAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMDEVVRMIEEIRSLDSGTRPSSEDNKAGEGEGDDDLNTQTM* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13215235 13217245 + Chy8G151660.1 Chy08g00561 232347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00561 636 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Chy08g00561 636 MobiDBLite consensus disorder prediction 289 310 - -
Chy08g00561 636 MobiDBLite consensus disorder prediction 606 636 - -
Chy08g00561 636 Pfam Protein kinase domain 338 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00561 636 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Chy08g00561 636 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524
Chy08g00561 636 Gene3D Transferase(Phosphotransferase) domain 1 413 624 - -
Chy08g00561 636 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Chy08g00561 636 SUPERFAMILY L domain-like 39 225 - -
Chy08g00561 636 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Chy08g00561 636 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Chy08g00561 636 PANTHER OS05G0588300 PROTEIN 9 621 - -
Chy08g00561 636 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Chy08g00561 636 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Chy08g00561 636 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy08g00561 636 MobiDBLite consensus disorder prediction 606 628 - -
Chy08g00561 636 PANTHER OS05G0480400 PROTEIN 9 621 - -
Chy08g00561 636 CDD STKc_IRAK 341 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01100 Chy-Chr1:12443511 Chy08g00561 Chy-Chr8:13215235 1.73E-66 dispersed
Chy06g01346 Chy-Chr6:13079193 Chy08g00561 Chy-Chr8:13215235 2.51E-180 dispersed
Chy08g00561 Chy-Chr8:13215235 Chy11g01173 Chy-Chr11:17853820 0 dispersed
Chy10g01174 Chy-Chr10:16557729 Chy08g00561 Chy-Chr8:13215235 3.12E-94 dispersed
Chy08g00561 Chy-Chr8:13215235 Chy06g01272 Chy-Chr6:11694990 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71429 PF00069 Pkinase 2.50E-37 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00561 - - csv:101210437 1136.71