Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00584 ATGGCGGTTTCCCCCCACTCTTTCCCACCGCGTAAACGCCGCCCCTCCGCCGCTGCCTTCGTCTCTCCCAAACTCTCCGCCCCAATCCTCCTCCAATCCCTCCTCTCCCTCTCCCAGGAAATCTCTTCCACTAAACCCCTCAAATTCCTTCTTAACCGCTACTCCATTTCCATGATCCGCAAATCCTTATTACTCGAAATTATCCTCCACGACCTCCTCCGCCGTCACCCAGTTCTCTCCCTCTCCCCCTCCGCTTCCCTCTGTCTCGAAGAAATGTACATCCTTTTACAAAGAATCAAAACCCTGCTCGAAGATTGTTCTAACGGAAGCAAGATCTGGCTACTCACTCAAAACCAATTCATCGCTAACAATTTCCACGAACTCACTTTGGATTTATCCACTCTACTCGATATCTTCCCTGTTAAAGACGCTGCTTTAACCGAAGACGTTGAGGAATTGTTTTACCTCTTGAGAAATCAAACCTCTGAATCCAGCGTGTTCCTCGATCCAAGAGATGAAGCTCTCCGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATTGTTCCGGATTATTCCGAATTGTTAGAGATTTTTACCATGATTGATATTCGTGATTCCTCTAGCTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACCGATGAGAAATCGAGATCTGATGTGATTGCTTTGATCGGGTTAGTTCGCTACGCGAAATGCGTATTGTATGGAGCGTCGACGACGGCGGAACACGGTTTCCAACGGAAAGATTCGATTTCCGACATGGCTGTACCGGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCGGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATTACGCTTTGGATTGAATCTGGACACAACACGTGTCCAAAGACAGGTCAGACTCTGGCCCACACGAACCTTATACCGAACCGGGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAAAGAATTCCGTTTGATATAACGGAAAGCAACAAGGATAGAGTCAACGACGTTACGTTAAATAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGTTGACTCTTCTGTGAACGATGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGCAGCCGTGGATATATCGCTCTAGCCGGAGCTCTACCTCTACTCGTCCGATATCTCAACTCCGAAAACCCGATTCTCCAAGTGAACGCCGTCACGACGGTGCTCAACCTCTCGATTTTTGAATCGAACAAATCGTTGATAATGGAGACCGAGGGTGCGTTGATCGGAGTTATCGAGGTACTCCGGTCCGGCGCCACTTGGGAAGCGAAAGGAAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACAGGCGGAGATTAGGAAGGAAGACACGTGTCATAAGGGGACTGCTTGATTTGGCGAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTTACGATTTTGACATTAGCCGGCGATAGGGAGACGGTCGGGAGGTTAGTCGAAGGTGGAGTTATGGAGACGGTGAGTTATTTGATGAACAGCTTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGATTTTATCTGATTAAGAAATTGGGGGTTGTGTTGAGAGAGGGCTCCGATAGGTCCAGAGAGAGCGCTGCGGCGGCCCTGGTGACAATGTGCCGGCAAGGTGGATCAGAGATGGTGACGGAGTTGGCGTCGATGGCCGGAATTGAGAGAGTCATTTGGGAATTGATGGGGAGTGGGACGATGAGGGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGGAAACGGCGGCGCGGGAGGAGATTCGATGACAGTTACATCGTCGAGAATGGGCGGCGAGTCAACCACGTTTGTTAGTTCGTCAAGAGGAGCAATTGTGCATAGCTAG 2070 49.95 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLNRYSISMIRKSLLLEIILHDLLRRHPVLSLSPSASLCLEEMYILLQRIKTLLEDCSNGSKIWLLTQNQFIANNFHELTLDLSTLLDIFPVKDAALTEDVEELFYLLRNQTSESSVFLDPRDEALRFRVLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTTAEHGFQRKDSISDMAVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDITESNKDRVNDVTLNKAALEAMRMTATFLVNKLATSVDSSVNDVVYELRVLAKTDPGSRGYIALAGALPLLVRYLNSENPILQVNAVTTVLNLSIFESNKSLIMETEGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVGRLVEGGVMETVSYLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGVVLREGSDRSRESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGAGGDSMTVTSSRMGGESTTFVSSSRGAIVHS* 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13493583 13495652 - Chy8G151890.1 Chy08g00584 232370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00584 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 664 - -
Chy08g00584 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 349 IPR013083 -
Chy08g00584 689 Coils Coil 209 236 - -
Chy08g00584 689 Pfam U-box domain 271 342 IPR003613 GO:0004842|GO:0016567
Chy08g00584 689 CDD RING-Ubox_PUB 275 317 IPR045210 -
Chy08g00584 689 SUPERFAMILY RING/U-box 262 343 - -
Chy08g00584 689 SUPERFAMILY ARM repeat 374 646 IPR016024 -
Chy08g00584 689 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Chy08g00584 689 MobiDBLite consensus disorder prediction 667 689 - -
Chy08g00584 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Chy08g00584 689 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Chy08g00584 689 Gene3D - 369 649 IPR011989 -
Chy08g00584 689 PANTHER U BOX DOMAIN-CONTAINING 11 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00584 - - - csv:101205143 1286.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00584 Chy-Chr8:13493583 Chy12g00056 Chy-Chr12:498638 1.15E-130 dispersed
Chy08g00584 Chy-Chr8:13493583 Chy12g01281 Chy-Chr12:17336515 1.31E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g376 Blo01g01030 . Bda01g00060 . . . . . . . Cma03g00299 Cma07g01227 Car03g00261 Car07g01182 Sed14g0585 Cpe10g00996 . Bhi03g02213 Tan03g0722 Cmetu08g1604 . Hepe04g0691 . . Cla04g00653 Cam04g0651 Cec04g0772 Cco04g0823 Clacu04g0698 Cmu04g0693 Cre04g0745 . Cone10ag0439 . . Lsi01g01607 Csa04g01681 Chy08g00584 . . . . . . . Bma01g01714 . . Cmo03g00311 Cmo07g01269 . . . . . Cpe19g00149 . . . . . . . . . . . . . . . . . Cme08g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009140 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 0 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g00584 Chy_Chr08 FPKM 3.362221 4.517908 0.751967 0.74107 1.217267 0.89417 0.0 0.443554 0.532167 0.414613