Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00584 ATGGCGGTTTCCCCCCACTCTTTCCCACCGCGTAAACGCCGCCCCTCCGCCGCTGCCTTCGTCTCTCCCAAACTCTCCGCCCCAATCCTCCTCCAATCCCTCCTCTCCCTCTCCCAGGAAATCTCTTCCACTAAACCCCTCAAATTCCTTCTTAACCGCTACTCCATTTCCATGATCCGCAAATCCTTATTACTCGAAATTATCCTCCACGACCTCCTCCGCCGTCACCCAGTTCTCTCCCTCTCCCCCTCCGCTTCCCTCTGTCTCGAAGAAATGTACATCCTTTTACAAAGAATCAAAACCCTGCTCGAAGATTGTTCTAACGGAAGCAAGATCTGGCTACTCACTCAAAACCAATTCATCGCTAACAATTTCCACGAACTCACTTTGGATTTATCCACTCTACTCGATATCTTCCCTGTTAAAGACGCTGCTTTAACCGAAGACGTTGAGGAATTGTTTTACCTCTTGAGAAATCAAACCTCTGAATCCAGCGTGTTCCTCGATCCAAGAGATGAAGCTCTCCGATTCAGAGTATTGAAGATGATCGATCGAATCAAAGACGAAATTGTTCCGGATTATTCCGAATTGTTAGAGATTTTTACCATGATTGATATTCGTGATTCCTCTAGCTGTAGAGAGGAAATCGAGAATCTCGAGGATGAAATTCAGAATCAAACCGATGAGAAATCGAGATCTGATGTGATTGCTTTGATCGGGTTAGTTCGCTACGCGAAATGCGTATTGTATGGAGCGTCGACGACGGCGGAACACGGTTTCCAACGGAAAGATTCGATTTCCGACATGGCTGTACCGGCGGATTTCAGGTGTCCGATTAGTTTGGATTTAATGCAAGACCCGGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATTACGCTTTGGATTGAATCTGGACACAACACGTGTCCAAAGACAGGTCAGACTCTGGCCCACACGAACCTTATACCGAACCGGGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAAAGAATTCCGTTTGATATAACGGAAAGCAACAAGGATAGAGTCAACGACGTTACGTTAAATAAAGCGGCGTTAGAAGCTATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGTTGACTCTTCTGTGAACGATGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGCAGCCGTGGATATATCGCTCTAGCCGGAGCTCTACCTCTACTCGTCCGATATCTCAACTCCGAAAACCCGATTCTCCAAGTGAACGCCGTCACGACGGTGCTCAACCTCTCGATTTTTGAATCGAACAAATCGTTGATAATGGAGACCGAGGGTGCGTTGATCGGAGTTATCGAGGTACTCCGGTCCGGCGCCACTTGGGAAGCGAAAGGAAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACAGGCGGAGATTAGGAAGGAAGACACGTGTCATAAGGGGACTGCTTGATTTGGCGAAAGACGGGCCGATTAGTTCGAAGAGGGATGCTCTGGTTACGATTTTGACATTAGCCGGCGATAGGGAGACGGTCGGGAGGTTAGTCGAAGGTGGAGTTATGGAGACGGTGAGTTATTTGATGAACAGCTTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGATTTTATCTGATTAAGAAATTGGGGGTTGTGTTGAGAGAGGGCTCCGATAGGTCCAGAGAGAGCGCTGCGGCGGCCCTGGTGACAATGTGCCGGCAAGGTGGATCAGAGATGGTGACGGAGTTGGCGTCGATGGCCGGAATTGAGAGAGTCATTTGGGAATTGATGGGGAGTGGGACGATGAGGGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGGAAACGGCGGCGCGGGAGGAGATTCGATGACAGTTACATCGTCGAGAATGGGCGGCGAGTCAACCACGTTTGTTAGTTCGTCAAGAGGAGCAATTGTGCATAGCTAG 2070 49.95 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLNRYSISMIRKSLLLEIILHDLLRRHPVLSLSPSASLCLEEMYILLQRIKTLLEDCSNGSKIWLLTQNQFIANNFHELTLDLSTLLDIFPVKDAALTEDVEELFYLLRNQTSESSVFLDPRDEALRFRVLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTTAEHGFQRKDSISDMAVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDITESNKDRVNDVTLNKAALEAMRMTATFLVNKLATSVDSSVNDVVYELRVLAKTDPGSRGYIALAGALPLLVRYLNSENPILQVNAVTTVLNLSIFESNKSLIMETEGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVGRLVEGGVMETVSYLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGVVLREGSDRSRESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRWAAGLDGNGGAGGDSMTVTSSRMGGESTTFVSSSRGAIVHS* 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13493583 13495652 - Chy8G151890.1 Chy08g00584 232370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00584 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 664 - -
Chy08g00584 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 349 IPR013083 -
Chy08g00584 689 Coils Coil 209 236 - -
Chy08g00584 689 Pfam U-box domain 271 342 IPR003613 GO:0004842|GO:0016567
Chy08g00584 689 CDD RING-Ubox_PUB 275 317 IPR045210 -
Chy08g00584 689 SUPERFAMILY RING/U-box 262 343 - -
Chy08g00584 689 SUPERFAMILY ARM repeat 374 646 IPR016024 -
Chy08g00584 689 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Chy08g00584 689 MobiDBLite consensus disorder prediction 667 689 - -
Chy08g00584 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Chy08g00584 689 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Chy08g00584 689 Gene3D - 369 649 IPR011989 -
Chy08g00584 689 PANTHER U BOX DOMAIN-CONTAINING 11 664 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00584 Chy-Chr8:13493583 Chy12g00056 Chy-Chr12:498638 1.15E-130 dispersed
Chy08g00584 Chy-Chr8:13493583 Chy12g01281 Chy-Chr12:17336515 1.31E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00584 - - csv:101205143 1286.17