Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00608 ATGACGTCTGAGAATTCTAGTGGAGGAAAGACATCAAGAAAGAGGCGAAATGAGTATGTTTCAGTAGTGGACACTCTAAACAAGTGGAAGAAGTTGAATAATCAATTGGAGGATTTGGCTAAAGATGGAGGAGTAGAGGAAACTCGTAAAGTTCCAGCTAAGGGCTCCAAGAAAGGTTGCATGAGAGGGAAAGGAGGACCTCAGAATTCAGATTGCAATTTTAGAGGTGTTCGACAGAGGACATGGGGAAAATGGGTAGCTGAAATTAGAGAGCCAATTGCAAGTAATAATAATATACGTTTGAAGAAGAAAGGCACTCGTTTATGGCTTGGCACTTTCTCCACTGCTCACCAGGCAGCTCATGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCGTTTGCTCGTCTTAATTTTCCTGATTCTTCTTCTCCTCCTGTTATGAAACCATTAACATCAGAGTATTCTGATACGATATCTCCTGTTGCTTCTTCCTCCTCTTCTTCTTCGTTCTTTAATGGAGTATCTGCAGACAAAAGGAAGGACTGTTATTCAATGGAAAAGCAAGAGAACTGTGAGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAGTAGAGTCAATTATACAGATATTAAACCCAATTCATTTTATGATTCTAACATTGGGAACAGATCAGAAGGAAATATAAAGGAAGGATTAGCTGATGTTCTAAGAAGCCATGATCAGAATGGCCCTTCTGAGCTTTGTTTTAAATTTGAAACTATGGATACAAATGGCTGCAATGACTTGAATGGATGCAATCCATATGTGCTACAGAAGCTTCAGAGTGATTCGTGTGCAAGAACTTACTGGATTCCAGCTGGGTGGGAGATCGGCGATCTTGGGTCTGCGACGGTGATGGAAGCAAAGCCAATGGAGATTGAGAGCTATGGAGACTGTATGGCCTTCAACCGTGATCTGGGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGTGACCAGAGAGTTGATGATTGCAACAACTTTGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGAAAGTGGCTTGATTTATGCTTCCATGGATGA 1122 41.8 MTSENSSGGKTSRKRRNEYVSVVDTLNKWKKLNNQLEDLAKDGGVEETRKVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNNIRLKKKGTRLWLGTFSTAHQAAHAYDEAAKAMYGPFARLNFPDSSSPPVMKPLTSEYSDTISPVASSSSSSSFFNGVSADKRKDCYSMEKQENCEYESMEELKVKVEETARSRVNYTDIKPNSFYDSNIGNRSEGNIKEGLADVLRSHDQNGPSELCFKFETMDTNGCNDLNGCNPYVLQKLQSDSCARTYWIPAGWEIGDLGSATVMEAKPMEIESYGDCMAFNRDLGLLLDRQKHMGVGDQRVDDCNNFEFLRPDYDFGLEEERKWLDLCFHG* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13894298 13895543 + Chy8G152130.1 Chy08g00608 232394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00608 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 252 - -
Chy08g00608 373 ProSiteProfiles AP2/ERF domain profile. 73 140 IPR001471 GO:0003700|GO:0006355
Chy08g00608 373 SUPERFAMILY DNA-binding domain 73 142 IPR016177 GO:0003677
Chy08g00608 373 MobiDBLite consensus disorder prediction 47 68 - -
Chy08g00608 373 CDD AP2 72 142 IPR001471 GO:0003700|GO:0006355
Chy08g00608 373 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Chy08g00608 373 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Chy08g00608 373 Pfam AP2 domain 72 132 IPR001471 GO:0003700|GO:0006355
Chy08g00608 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 252 - -
Chy08g00608 373 SMART rav1_2 73 146 IPR001471 GO:0003700|GO:0006355
Chy08g00608 373 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00199 Chy-Chr3:1873960 Chy08g00608 Chy-Chr8:13894298 8.06E-43 dispersed
Chy04g00464 Chy-Chr4:4323257 Chy08g00608 Chy-Chr8:13894298 4.34E-34 dispersed
Chy04g01742 Chy-Chr4:23786687 Chy08g00608 Chy-Chr8:13894298 1.12E-30 dispersed
Chy08g00608 Chy-Chr8:13894298 Chy02g00711 Chy-Chr2:4301477 7.79E-20 dispersed
Chy08g00608 Chy-Chr8:13894298 Chy03g01419 Chy-Chr3:16921001 2.50E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18408 PF00847 AP2 1.90E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00608 - K09286 csv:101215862 704.901