Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00693 ATGGCCGGAGGAGAGGAAGTGAAAGTGTTTGGTTTCCGCTCAGGTTCGTATAGTCGGAGAGTGGAGTTAGCTTTTAAACTCAAAGGCGTCGATTATGAACACATTGACGAAGATTTGCTTAACAACAATAAGAGCGATTTGTTGCTGAAATACAACCCAATTTACCAGAAAGTGCCCGTTCTTGTCCACAATGGAAAACCCATTTCAGAGTCTCGTGTAATCCTTGAATACATCGACGAAACTTGGACCCAAAATTATGCCATCTTGCCTACAGATCCCTATGAAAGAGCTCTTGCAAGATTCTGGGCTAAGTATATTGATGAAAAGGTTGTGCCTGCGATAGAGAAAGCTTTTAGAAGCAATGAAGAAGAAAGAGAGAAGAGAATAGAAGAAGCTCAAGAGATGCTAGAACCACTTGAGAAAGAGCTTCAAAACAAGTTATTCTTTGGAGGAGACAAAATTGGATTTGTTGACATTGTAGGTCTGGTTATACCAGGGTGGATGCATGCCAGTCAAGAAGCTGCAGGCTTTGAAGTTCTAACAATTCACAAATTTCCAAACCTAAACAGATGGATTCAAGATTATTTGAACCACAGCGTTGCAAAGGAAGTTCTACCGCAAAAGGATTTTCTTGTTGCATTTTTGAGCAAAGTTGTGTTTGGTCGAAATAACTAG 675 40.3 MAGGEEVKVFGFRSGSYSRRVELAFKLKGVDYEHIDEDLLNNNKSDLLLKYNPIYQKVPVLVHNGKPISESRVILEYIDETWTQNYAILPTDPYERALARFWAKYIDEKVVPAIEKAFRSNEEEREKRIEEAQEMLEPLEKELQNKLFFGGDKIGFVDIVGLVIPGWMHASQEAAGFEVLTIHKFPNLNRWIQDYLNHSVAKEVLPQKDFLVAFLSKVVFGRNN* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14757060 14758324 - Chy8G152980.1 Chy08g00693 232479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00693 224 Pfam Glutathione S-transferase, N-terminal domain 6 80 IPR004045 -
Chy08g00693 224 Pfam Glutathione S-transferase, C-terminal domain 101 196 IPR004046 -
Chy08g00693 224 CDD GST_N_Tau 7 82 - -
Chy08g00693 224 PANTHER GLUTATHIONE S-TRANSFERASE U8 5 215 - -
Chy08g00693 224 Coils Coil 122 142 - -
Chy08g00693 224 SUPERFAMILY Thioredoxin-like 7 111 IPR036249 -
Chy08g00693 224 SUPERFAMILY GST C-terminal domain-like 80 217 IPR036282 -
Chy08g00693 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Chy08g00693 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 86 IPR004045 -
Chy08g00693 224 SFLD Main.3: Omega- and Tau-like 5 217 IPR045073 -
Chy08g00693 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 215 IPR045073 -
Chy08g00693 224 Gene3D - 92 220 - -
Chy08g00693 224 CDD GST_C_Tau 93 217 IPR045074 GO:0004364|GO:0006749
Chy08g00693 224 Gene3D Glutaredoxin 1 91 - -
Chy08g00693 224 SFLD Glutathione Transferase (cytosolic) 5 217 IPR040079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00693 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101220464 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00693 Chy-Chr8:14757060 Chy08g00695 Chy-Chr8:14774119 7.92E-86 dispersed
Chy08g00692 Chy-Chr8:14742645 Chy08g00693 Chy-Chr8:14757060 1.71E-115 tandem
Chy08g00693 Chy-Chr8:14757060 Chy08g00694 Chy-Chr8:14761872 2.67E-118 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g819 . . . . . . . . . . . Cma07g01029 Car03g00339 . Sed03g2333 . . Bhi03g02068 Tan03g0874 Cmetu08g0413 . Hepe04g0805 . . . . . . . . . . . . . Lsi01g01490 Csa04g01561 Chy08g00693 . . . . . . . . . . . Cmo07g01075 . . . . . Cpe19g00327 . . . . . . . . . . . . . . . . . Cme08g02469
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g01668 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 1.9e-63 239.2
Chy01g01670 . 1 210 Glutathione S-transferase Gene Family AT4G02520 58.2 2.5e-63 238.8
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT2G02930 59.1 1.7e-64 242.7
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 5.0e-64 241.1
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT2G02930 56.5 2.3e-37 152.5
Chy01g01668 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.7 4.5e-59 224.9
Chy01g01670 . 6 215 Glutathione S-transferase Gene Family AT1G02950 52.6 1.1e-57 220.3
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT1G02930 57.8 9.2e-63 236.9
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.7e-62 235.3
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT1G02930 56.3 8.7e-37 150.6
Chy01g01670 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.2 2.9e-64 241.9
Chy01g01668 . 1 210 Glutathione S-transferase Gene Family AT1G02920 55.2 2.4e-63 238.8
Chy01g01669 . 3 146 Glutathione S-transferase Gene Family AT1G02920 57.6 5.5e-39 157.9
Chy01g01668 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 5.4e-68 254.6
Chy01g01670 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.3 9.5e-65 243.8
Chy01g01669 . 3 150 Glutathione S-transferase Gene Family AT2G47730 51.0 8.4e-37 151.0
Chy01g01670 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.0 4.6e-48 188.3
Chy08g00693 . 1 209 Glutathione S-transferase Gene Family AT2G29450 50.5 7.4e-50 194.1
Chy08g00693 . 5 221 Glutathione S-transferase Gene Family AT3G09270 54.8 9.0e-64 240.4
Chy08g00692 . 4 225 Glutathione S-transferase Gene Family AT3G09270 51.1 9.9e-63 236.9
Chy08g00690 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.6 1.3e-62 236.5
Chy08g00694 . 4 216 Glutathione S-transferase Gene Family AT3G09270 51.2 4.2e-61 231.5
Chy08g00695 . 2 216 Glutathione S-transferase Gene Family AT3G09270 52.3 5.5e-61 231.1
Chy08g00682 . 1 218 Glutathione S-transferase Gene Family AT3G09270 53.0 7.9e-60 227.3
Chy08g00685 . 3 218 Glutathione S-transferase Gene Family AT3G09270 50.2 2.5e-58 222.2
Chy06g00270 . 2 214 Glutathione S-transferase Gene Family AT3G09270 50.2 1.6e-57 219.5
Chy07g01035 . 4 214 Glutathione S-transferase Gene Family AT1G78380 69.8 2.6e-84 308.5
Chy07g01042 . 1 216 Glutathione S-transferase Gene Family AT1G78380 66.2 2.6e-84 308.5
Chy07g01038 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.7 7.7e-84 307.0
Chy07g01039 . 1 216 Glutathione S-transferase Gene Family AT1G78380 64.5 6.7e-80 293.9
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G78380 53.3 4.4e-47 184.9
Chy07g01042 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.7 5.8e-76 280.8
Chy07g01035 . 8 214 Glutathione S-transferase Gene Family AT1G78370 62.5 7.6e-76 280.4
Chy07g01039 . 7 213 Glutathione S-transferase Gene Family AT1G78370 63.9 2.2e-75 278.9
Chy07g01038 . 7 216 Glutathione S-transferase Gene Family AT1G78370 58.6 3.5e-73 271.6
Chy07g01043 . 170 333 Glutathione S-transferase Gene Family AT1G78370 51.8 5.0e-43 171.4
Chy07g01035 . 1 214 Glutathione S-transferase Gene Family AT1G78340 65.1 7.4e-79 290.4
Chy07g01042 . 1 216 Glutathione S-transferase Gene Family AT1G78340 61.6 1.8e-77 285.8
Chy07g01038 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.9 8.4e-75 276.9
Chy07g01039 . 1 213 Glutathione S-transferase Gene Family AT1G78340 59.8 1.2e-73 273.1
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G78340 53.3 6.1e-49 191.0
Chy07g01035 . 3 218 Glutathione S-transferase Gene Family AT1G78320 53.7 2.0e-59 225.7
Chy07g01038 . 1 221 Glutathione S-transferase Gene Family AT1G78320 50.5 3.2e-57 218.4
Chy07g01035 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.8 1.4e-88 322.8
Chy07g01038 . 1 220 Glutathione S-transferase Gene Family AT1G17180 63.6 1.9e-82 302.4
Chy07g01042 . 1 218 Glutathione S-transferase Gene Family AT1G17180 61.0 7.2e-82 300.4
Chy07g01039 . 1 215 Glutathione S-transferase Gene Family AT1G17180 64.4 2.1e-81 298.9
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G17180 53.3 1.8e-48 189.5
Chy07g01035 . 1 217 Glutathione S-transferase Gene Family AT1G17190 60.6 2.0e-76 282.3
Chy07g01042 . 3 217 Glutathione S-transferase Gene Family AT1G17190 54.4 6.3e-70 260.8
Chy07g01038 . 2 218 Glutathione S-transferase Gene Family AT1G17190 55.3 1.1e-69 260.0
Chy07g01039 . 2 214 Glutathione S-transferase Gene Family AT1G17190 57.0 4.1e-69 258.1
Chy07g01043 . 167 333 Glutathione S-transferase Gene Family AT1G17190 52.1 7.0e-45 177.6
Chy07g01042 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.1 1.2e-68 256.5
Chy07g01038 . 3 212 Glutathione S-transferase Gene Family AT3G43800 53.5 2.7e-68 255.4
Chy07g01035 . 1 214 Glutathione S-transferase Gene Family AT3G43800 53.4 2.0e-66 249.2
Chy07g01035 . 3 218 Glutathione S-transferase Gene Family AT1G53680 55.7 3.0e-67 251.9
Chy07g01038 . 1 221 Glutathione S-transferase Gene Family AT1G53680 54.4 1.5e-66 249.6
Chy07g01042 . 4 218 Glutathione S-transferase Gene Family AT1G53680 54.4 4.8e-65 244.6
Chy07g01039 . 2 213 Glutathione S-transferase Gene Family AT1G53680 55.3 1.5e-63 239.6
Chy07g01043 . 168 333 Glutathione S-transferase Gene Family AT1G53680 52.1 3.0e-43 172.2
Chy11g00032 . 36 207 Glutathione S-transferase Gene Family AT2G02390 67.4 6.8e-60 227.3
Chy11g00028 . 50 218 Glutathione S-transferase Gene Family AT2G02390 63.9 3.1e-57 218.4
Chy11g00028 . 6 218 Glutathione S-transferase Gene Family AT2G02380 58.2 1.9e-69 259.2
Chy11g00032 . 14 205 Glutathione S-transferase Gene Family AT2G02380 61.7 8.4e-62 233.8
Chy06g00242 . 700 879 Glutathione S-transferase Gene Family AT2G02380 50.6 2.0e-47 186.0
Chy07g01212 . 1 237 Glutathione S-transferase Gene Family AT5G41210 69.2 2.4e-94 342.0
Chy07g01212 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.1 7.8e-91 331.6
Chy04g02105 . 9 235 Glutathione S-transferase Gene Family AT5G02780 67.5 4.0e-86 314.7
Chy10g00609 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 7.3e-80 293.9
Chy04g02103 . 13 143 Glutathione S-transferase Gene Family AT5G02780 69.7 5.1e-49 191.4
Chy10g00609 . 17 292 Glutathione S-transferase Gene Family AT3G55040 60.3 5.8e-87 317.8
Chy04g02105 . 6 236 Glutathione S-transferase Gene Family AT3G55040 59.3 2.4e-77 285.8
Chy04g02103 . 3 144 Glutathione S-transferase Gene Family AT3G55040 59.9 2.9e-46 182.6
Chy04g02105 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.1 1.7e-92 335.9
Chy10g00609 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 7.7e-82 300.4
Chy04g02103 . 7 148 Glutathione S-transferase Gene Family AT5G02790 69.0 1.4e-54 209.9
Chy10g00583 . 1 212 Glutathione S-transferase Gene Family AT1G19570 66.7 3.5e-81 298.1
Chy06g01363 . 6 213 Glutathione S-transferase Gene Family AT1G19570 60.8 5.9e-73 270.8
Chy10g00583 . 1 211 Glutathione S-transferase Gene Family AT1G75270 71.7 6.1e-86 313.9
Chy06g01363 . 6 213 Glutathione S-transferase Gene Family AT1G75270 62.7 1.4e-74 276.2
Chy06g01363 . 2 216 Glutathione S-transferase Gene Family AT5G16710 78.1 1.2e-99 359.8
Chy10g00583 . 3 210 Glutathione S-transferase Gene Family AT5G16710 61.1 5.9e-75 277.7
Chy07g00602 . 1 268 Glutathione S-transferase Gene Family AT1G77290 69.4 5.4e-108 387.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy08g00693 Chy_Chr08 FPKM 2.932584 2.259701 1.378221 1.599518 4.215489 4.224645 3.387785 3.40761 3.43011 3.843669