Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00748 ATGGGTATCTTCCTTTTCCTTTTCTTCTTACCACATTTTCTTTTTTGGGTTTCTTTCTCTCATTTCTTTGTTTTTTCAGGTGGTGCTTGTGGGTATGGTAATCTCTACAGCCAAGGCTATGGCGTCAACACAGCTGCTCTCAGTACTGCTCTTTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTCGATGGTGCCATCCGGGTAGCCCTTCTATTTTCATTACGGCTACCAATTTTTGCCCCCCAAATTTTGCTCTTCCTAATGACAATGGTGGTTGGTGTAACCCTCCTCGCACTCATTTCGACCTCGCTATGCCTATGTTCCTCAAGATAGCTGAGTACCGAGCTGGAATTGTACCTGTCTCTTACCGCCGAGTGCCATGTAGGAAACAAGGAGGAATTAGGTTCACAATCAACGGTTTCCGTTACTTCAATTTGGTATTAATCACCAACGTAGCCGGTGCAGGGGATATCGTGAAGGTTAGCGTAAAAGGATCAAACACCGGTTGGATGAGCATGAGTCGTAACTGGGGCCAAAATTGGCAATCCAATGCCGTTTTAGTGGGTCAGACCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGAACTTCAACTTCATGGAACCTGGCACCTTCTAATTGGCAGTTCGGTCAGACATTCACCGGAAAGAATTTTCGCATTTGA 708 46.47 MGIFLFLFFLPHFLFWVSFSHFFVFSGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTGWMSMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNLAPSNWQFGQTFTGKNFRI* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15209147 15210548 + Chy8G153530.1 Chy08g00748 232534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00748 235 PANTHER EXPANSIN-A15 26 234 IPR002963 GO:0009664
Chy08g00748 235 SUPERFAMILY Barwin-like endoglucanases 13 159 IPR036908 -
Chy08g00748 235 Gene3D - 20 137 IPR036908 -
Chy08g00748 235 Gene3D - 141 233 IPR036749 -
Chy08g00748 235 SUPERFAMILY PHL pollen allergen 138 230 IPR036749 -
Chy08g00748 235 PRINTS Expansin signature 39 53 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 116 129 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 152 173 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 66 77 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 216 232 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 80 90 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 99 116 IPR002963 GO:0009664
Chy08g00748 235 PRINTS Expansin signature 140 152 IPR002963 GO:0009664
Chy08g00748 235 Pfam Lytic transglycolase 44 131 IPR009009 -
Chy08g00748 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 230 IPR007117 -
Chy08g00748 235 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Chy08g00748 235 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Chy08g00748 235 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Chy08g00748 235 PRINTS Expansin/Lol pI family signature 178 192 IPR007118 GO:0005576
Chy08g00748 235 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Chy08g00748 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 141 IPR007112 -
Chy08g00748 235 SMART dpbb_1 44 131 IPR007112 -
Chy08g00748 235 Pfam Expansin C-terminal domain 142 219 IPR007117 -
Chy08g00748 235 PANTHER EXPANSIN 26 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00748 Chy-Chr8:15209147 Chy09g00397 Chy-Chr9:3497307 5.11E-134 dispersed
Chy10g00538 Chy-Chr10:11972620 Chy08g00748 Chy-Chr8:15209147 2.21E-147 wgd
Chy11g01222 Chy-Chr11:18396907 Chy08g00748 Chy-Chr8:15209147 3.18E-146 wgd
Chy12g00201 Chy-Chr12:2415956 Chy08g00748 Chy-Chr8:15209147 1.93E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00748 - - csv:101212872 444.891