Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00757 ATGGCTGATAACGAGGATATCCAGCCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTCGGAATGGGGCAGAAAGACGCTTATGTTGGGGATGAAGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAGTTCTTCTCACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTTCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGCCGTGACCTCACCGACGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCCGAGCGTGAAATTGTAAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCGAAGACTAGCTCTTCTGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATTACCATTGGGGCTGAACGCTTCCGATGCCCAGAAGTCCTCTTCCAACCATCCATGATTGGTATGGAAGCTGCCGGTATTCACGAAACCACATACAATTCCATCATGAAATGCGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAGATCACAGCGTTGGCCCCAAGCAGCATGAAAATTAAGGTGGTTGCGCCACCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTAAGCACTTTCCAGCAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGCCCTTCAATTGTTCACAGGAAATGCTTCTAA 1134 47.0 MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15277610 15279358 - Chy8G153620.1 Chy08g00757 232543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00757 377 Gene3D - 140 340 - -
Chy08g00757 377 SMART actin_3 7 377 IPR004000 -
Chy08g00757 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Chy08g00757 377 Pfam Actin 5 377 IPR004000 -
Chy08g00757 377 PANTHER ACTIN 3 1 376 - -
Chy08g00757 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Chy08g00757 377 PANTHER ACTIN 1 376 IPR004000 -
Chy08g00757 377 Gene3D - 10 371 - -
Chy08g00757 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Chy08g00757 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Chy08g00757 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Chy08g00757 377 PRINTS Actin signature 28 37 IPR004000 -
Chy08g00757 377 PRINTS Actin signature 51 62 IPR004000 -
Chy08g00757 377 PRINTS Actin signature 63 85 IPR004000 -
Chy08g00757 377 PRINTS Actin signature 117 130 IPR004000 -
Chy08g00757 377 PRINTS Actin signature 142 161 IPR004000 -
Chy08g00757 377 PRINTS Actin signature 238 254 IPR004000 -
Chy08g00757 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Chy08g00757 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00757 Chy-Chr8:15277610 Chy11g00060 Chy-Chr11:639147 0 dispersed
Chy04g01779 Chy-Chr4:24120671 Chy08g00757 Chy-Chr8:15277610 0 transposed
Chy05g01299 Chy-Chr5:17219538 Chy08g00757 Chy-Chr8:15277610 4.30E-41 transposed
Chy06g01882 Chy-Chr6:22684874 Chy08g00757 Chy-Chr8:15277610 1.09E-34 transposed
Chy09g00409 Chy-Chr9:3590471 Chy08g00757 Chy-Chr8:15277610 0 transposed
Chy10g00535 Chy-Chr10:11933729 Chy08g00757 Chy-Chr8:15277610 1.85E-18 transposed
Chy10g00547 Chy-Chr10:12097906 Chy08g00757 Chy-Chr8:15277610 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00757 K10355 - csv:101214246 751.125