Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00790 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCAACCACTAACGCTCCTTCTCCCTCCAATAAATACTCTTCATCTGAACCCACTTCTCGAAATCCCTCCTCCTCCACGAATATGCAGTCCTTGCCCTACCCCCATGTTGATTCCAGCCTTCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGTCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTTACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCTCTTTGGATTATCTTTGAAGTTTCGGGCACAATTAACTTGTCTTCGTATTTGAGTGTGTCATCGTATAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGTAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCGAACTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGCAAGCACGGATATCACTATTTCTAGGTGTTACTTCTCACATCATGACAAGACAATGCTCATTGGAGCCGATCCTTCTCACATTGGTGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGATGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGTATCTATGCTGTCTGTGCTAGTGTAGAATCAAAGATATACTCTCAGTGCAACATATACGAAGCAGGAGATAAAAAGGTGGCATTTAAATATCTAACTGAAAAGGCAACAGACAAGGAAAAGCCGTCAAGTGGTTCCATATGGTCTGATGGAGACTTATTTGTAAAGGACACTCAAAGTGGGCTATTGGCTCCAACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTAATTGGACAGTGGAACCTGCAACAGATGCTCTTAAACATATTCTCCAACATTGTACTGGATGTCAAAACATCCCAAGACCCACTGATCAGCCTCTGGTACCTTAG 1131 44.03 MGNAHGHRKHFNHGVNTSPTTNAPSPSNKYSSSEPTSRNPSSSTNMQSLPYPHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRMKEPLWIIFEVSGTINLSSYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRASTDITISRCYFSHHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEAGDKKVAFKYLTEKATDKEKPSSGSIWSDGDLFVKDTQSGLLAPTAEHNLFHPSQHYSNWTVEPATDALKHILQHCTGCQNIPRPTDQPLVP* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15533000 15535876 - Chy8G153950.1 Chy08g00790 232576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00790 376 SMART amb_all 76 289 IPR002022 -
Chy08g00790 376 Gene3D - 50 359 IPR012334 -
Chy08g00790 376 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Chy08g00790 376 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Chy08g00790 376 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Chy08g00790 376 PANTHER PECTATE LYASE 18-RELATED 43 369 IPR045032 GO:0030570
Chy08g00790 376 Pfam Pectate lyase 120 281 IPR002022 -
Chy08g00790 376 PANTHER PECTATE LYASE 43 369 - -
Chy08g00790 376 SUPERFAMILY Pectin lyase-like 64 367 IPR011050 -
Chy08g00790 376 MobiDBLite consensus disorder prediction 13 50 - -
Chy08g00790 376 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00790 Chy-Chr8:15533000 Chy02g00418 Chy-Chr2:2640386 4.50E-51 dispersed
Chy03g00980 Chy-Chr3:13289445 Chy08g00790 Chy-Chr8:15533000 2.43E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00790 K01728 - csv:101219724 776.163