Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00813 ATGTTGGACCTCAATCTCTGCATTCTCCCCGGAGAGTTCACTTCCGGTGGAACCGGTTTACATCCCTTCAATCTTTCCCCTTCCGAAGCTGAGAGTCCCATTTCATCCTCCGTCCATAACGCCGATCATTCCAACGTCAATGGCGATAATGACTCTTCTTCTAACGCCGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAGCGCGACCGGACGGCTCAGTTTCCTGTCGCCGGCGGGTTTTCCTCCAATGTCTATTCTCAAAGGAAATGGGTGGACTCTGATTTTGTTAGAGCCACTAACGGAATCGTGGTTCAACAATCTGCTCATCCAGCTAAAAAGGGTCGGCGAGGCCCCAAATCAAGAAGCTCTCAGTATCGTGGGGTTACGTATTATCGCAGGACAGGGAGATGGGAATCGCATATCTGGGATAGTGGGAAACAAGTCTATTTGGGCGGTTTTGATACTGCTCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCACGCTGATATAAATTTCAATGTCAGTGACTATAATGAAGAAATTAAACAGATGGGTAATTTTAGTAAAGAGGAGTTTGTACATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGAAGTTCTAAATACAGAGGTGTTACTCTGCACAAATGTGGGAGATGGGAAGCTCGAATGGGGCAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAAAGTTCCTATGAGATGGAGCTTGCTTTTGAATCTGAAAACCAAGATATGGGTGATATTGACTTGAACTTGGGTATTGCTCCTCCTTGTCCATCTGAAGATCAAAAGGACAACCTTAATGGCTGTGCTCCATGTAATTTGTGTACCTTAAATAAATCAAATTCTGAGAGATCTGAGTTCATAATGCTTGCTGAGAAACATGCTTCTATGGCTATAAGAGCAAACCCTTCTTTTTTGAGTCCTCCCAATTTCTTTCCTACCTACCAGGAGAGAGCAATGGAGAAGAAAATGGAAGTTGAATCTTTACCCAACTGTTGTTGGCGGCCAATCTCCGTGCCCTACGGCGGAGCAAATTCAGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTAATTCTCCGACCGCCGTTGTTCCTCCGCCCTCCCCTCGCCATCTTCTTCCATTGCCGCTATTCCTCCACCACCACATTCCGCCTTCTATTCCGGCCACTAATACCGTAACTCACTTCTATTGCAAGACCTGA 1371 45.59 MLDLNLCILPGEFTSGGTGLHPFNLSPSEAESPISSSVHNADHSNVNGDNDSSSNADCGFTFSFSILNNSNDDQRDRTAQFPVAGGFSSNVYSQRKWVDSDFVRATNGIVVQQSAHPAKKGRRGPKSRSSQYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNVSDYNEEIKQMGNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMELAFESENQDMGDIDLNLGIAPPCPSEDQKDNLNGCAPCNLCTLNKSNSERSEFIMLAEKHASMAIRANPSFLSPPNFFPTYQERAMEKKMEVESLPNCCWRPISVPYGGANSVPFFSTAASSGFPSNSPTAVVPPPSPRHLLPLPLFLHHHIPPSIPATNTVTHFYCKT* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15713566 15717458 + Chy8G154180.1 Chy08g00813 232599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00813 456 MobiDBLite consensus disorder prediction 113 132 - -
Chy08g00813 456 CDD AP2 222 282 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 PRINTS Ethylene responsive element binding protein signature 262 282 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 Pfam AP2 domain 131 179 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 Pfam AP2 domain 222 272 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 MobiDBLite consensus disorder prediction 28 52 - -
Chy08g00813 456 ProSiteProfiles AP2/ERF domain profile. 131 187 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 ProSiteProfiles AP2/ERF domain profile. 223 280 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 453 - -
Chy08g00813 456 MobiDBLite consensus disorder prediction 20 52 - -
Chy08g00813 456 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 SUPERFAMILY DNA-binding domain 222 281 IPR016177 GO:0003677
Chy08g00813 456 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Chy08g00813 456 SMART rav1_2 223 286 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 SMART rav1_2 131 193 IPR001471 GO:0003700|GO:0006355
Chy08g00813 456 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 453 - -
Chy08g00813 456 Gene3D AP2/ERF domain 222 281 IPR036955 GO:0003700|GO:0006355
Chy08g00813 456 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00901 Chy-Chr2:5833655 Chy08g00813 Chy-Chr8:15713566 6.72E-11 dispersed
Chy08g00813 Chy-Chr8:15713566 Chy11g00229 Chy-Chr11:2147611 6.88E-88 dispersed
Chy01g01407 Chy-Chr1:19281500 Chy08g00813 Chy-Chr8:15713566 8.73E-06 transposed
Chy10g00619 Chy-Chr10:12785616 Chy08g00813 Chy-Chr8:15713566 2.53E-11 wgd
Chy11g01294 Chy-Chr11:19151202 Chy08g00813 Chy-Chr8:15713566 8.00E-126 wgd
Chy03g00967 Chy-Chr3:13208870 Chy08g00813 Chy-Chr8:15713566 5.08E-11 wgd
Chy04g02096 Chy-Chr4:26347995 Chy08g00813 Chy-Chr8:15713566 8.09E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18421 PF00847 AP2 1.50E-10 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00813 K09284 - csv:101211008 848.966