Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy08g00823 | ATGGTGTATCTTCATGCAGATCCAGATGCAGAGGTAATTGCTTTATCTCCGAACACACTAATGGCAACAAACAGATTCATATGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAAAACTTACAACTACACAGAAGAGGCCACAATTTGCCATGGAAGCTAAGACAAAGAAGCAGCAAAGAAGCAGTAGTAGTTAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCACGATCCAAGTAGAGCACTTGGGGACCTAACTGGAATTAAAAAACATTATAGTAGAAAACATGGGGAGAAGAAATGGAAGTGCGAGAAATGCTGTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAGAGACTACAAATGTGACTGTGGAACACTCTTTTCAAGGAAGGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGATAATATCATCAGTTACCTCACCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATTCAATAATCAAGTCCCAATTTCAAGACCATAATTTTGAATCATCACCTTTTTTCCCACAAATTCTTCCACCCACTAATAATCTCTTCCAAATCTCAAACCAAGTCTTGAGTTTGAACAACAAAAATAATAATCACAATCCTTCAAAAACAGCCATTATGAACCTCACTCTGTCCTCCTTTACCCACAAACAACAACAACAACAACAAAGTGTAGCAGCTTATGATAACTCGCCATCGTTTTGCTCGGCCACGGGTGGTGGCGGTGGAGGGATGTCGGCGACGGCGCTGCTGTTGAAAGCGGCGCAATTGGGGTCGACAAAGAGCAATGATAACTCATTTTGTTCAGGGAGTAATAGTGTGGGAGTAGTTATGAGTTCATCATCTTCTTCAAACAATATTTCAGTTGAGAATGGTAATTATTTTGGGGGAAAGGGAAATGGGTTGAGGGATTTTTTTGGGAGGAAGGAATCAGGAGAAGAGTTGATTATTCCATTAATGGAGTCGGAGATGACAAAATTTGCTAATTGTATGAGCTCTGAGATGGGGTTTATTAGCCAATTCATTGGGAATAATAGTCTTAGATAA | 1131 | 38.82 | MVYLHADPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEAVVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCCKKYAVQSDWKAHSKTCGTRDYKCDCGTLFSRKDSFITHRAFCDALAEESAKIISSVTSPNSRLNFIANNNNSIIKSQFQDHNFESSPFFPQILPPTNNLFQISNQVLSLNNKNNNHNPSKTAIMNLTLSSFTHKQQQQQQSVAAYDNSPSFCSATGGGGGGMSATALLLKAAQLGSTKSNDNSFCSGSNSVGVVMSSSSSSNNISVENGNYFGGKGNGLRDFFGRKESGEELIIPLMESEMTKFANCMSSEMGFISQFIGNNSLR* | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 15781028 | 15783485 | + | Chy8G154280.1 | Chy08g00823 | 232609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy08g00823 | 376 | Gene3D | Classic Zinc Finger | 62 | 153 | - | - | |
| Chy08g00823 | 376 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 7 | 312 | - | - | |
| Chy08g00823 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 25 | 125 | IPR036236 | - | |
| Chy08g00823 | 376 | Gene3D | Classic Zinc Finger | 22 | 49 | - | - | |
| Chy08g00823 | 376 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 28 | 48 | IPR013087 | - | |
| Chy08g00823 | 376 | Pfam | Zinc-finger double-stranded RNA-binding | 26 | 48 | IPR022755 | - | |
| Chy08g00823 | 376 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 26 | 48 | IPR013087 | - | |
| Chy08g00823 | 376 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 7 | 312 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy08g00823 | Chy-Chr8:15781028 | Chy11g00664 | Chy-Chr11:8175368 | 1.51E-106 | dispersed | |
| Chy04g02074 | Chy-Chr4:26207043 | Chy08g00823 | Chy-Chr8:15781028 | 1.09E-107 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18423 | PF12171 | zf-C2H2_jaz | 5.20E-05 | CL0361 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy08g00823 | K25870 | - | csv:101221389 | 666.766 |