Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00828 ATGACTATGTATGAATATGAATGGGCAGGAGGACATATAAACCCAGCAGTAACATTTGGTCTGTTCTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGTACTGTACATAATGGCTCAGTGTTTAGGAGCCATTTGTGGGTGTGGTATAGTGAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCTGGTGCCGGCCTTGCCGCTGAGATCATCGGAACCTTTGTTCTTGTGTACACCGTCTTCTCTGCTACCGATCCCAAGAGAAAAGCCAGAGATTCTCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTTGCGGTGTTCGTGGTGAATTTAGCGACGATTCCGGTGACCGGCGCCGGGATTAACCCAGCTCGAAGCTTCGGCTCAGCAGTGATGTTCAACAACCACAAAGCTTGGGATAACCATTGGATATTTTGGATTGGACCTTTCATTGGAGCTGCAATGGCTGCAACTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCCAAGACCTTGAAATCCTTCAAAACTTCCTCAGTTTAG 582 48.63 MTMYEYEWAGGHINPAVTFGLFLGRKVSLVRAVLYIMAQCLGAICGCGIVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWIGPFIGAAMAATYHEFVLRGGAAKTLKSFKTSSV* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15814032 15814909 - Chy8G154330.1 Chy08g00828 232614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00828 193 Pfam Major intrinsic protein 9 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00828 193 ProSitePatterns MIP family signature. 12 20 IPR022357 -
Chy08g00828 193 Gene3D Glycerol uptake facilitator protein. 3 193 IPR023271 -
Chy08g00828 193 CDD MIP 10 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00828 193 SUPERFAMILY Aquaporin-like 6 178 IPR023271 -
Chy08g00828 193 PRINTS Major intrinsic protein family signature 80 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00828 193 PRINTS Major intrinsic protein family signature 156 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00828 193 PRINTS Major intrinsic protein family signature 116 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00828 193 PRINTS Major intrinsic protein family signature 31 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00828 193 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 190 IPR034294 -
Chy08g00828 193 PANTHER AQUAPORIN PIP2-1 9 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00828 Chy-Chr8:15814032 Chy08g00833 Chy-Chr8:15840346 4.35E-102 dispersed
Chy08g00828 Chy-Chr8:15814032 Chy08g00831 Chy-Chr8:15825011 1.08E-101 proximal
Chy11g00808 Chy-Chr11:11587712 Chy08g00828 Chy-Chr8:15814032 3.23E-100 wgd
Chy03g00960 Chy-Chr3:13152706 Chy08g00828 Chy-Chr8:15814032 4.60E-93 wgd
Chy04g02069 Chy-Chr4:26182920 Chy08g00828 Chy-Chr8:15814032 2.75E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00828 K09872 - csv:101215842 373.629