Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00831 ATGGCCAAAGATTCCGATGCCGGAGCCTTCGCCGCCAAGGACTACCACGACCCTCCACCGGCCCCTTTCATCGACCCCCACGAGTTCACTCAATGGTCATTTTACAGAGCCATCATCGCCGAGTTCATCGCCACTCTCCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAATAGCCAGTCCGACATTAAACATAACGGCCAAATCTGCGGTGGTGTCGGCATTCTCGGCATCGCTTGGGCTTTTGGTGGAATGATCTTCGTTCTTGTCTACTGTACTGCTGGAATCTCAGGTGGGCATATCAATCCTGCTGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTTAAATCGTTTCAAAAGGGTCTTTACACTCGTTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACCGGCACTGGCTTAGCCGCTGAGATCATCGGAACTTTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGCGCTAGAGATTCTCACATTCCAGTTCTAGCTCCTCTGCCAATTGGGTTCGCCGTGTTCATGGTTCACCTAGCCACCATTCCAGTCACCGGCACCGGTATTAACCCAGCTCGAAGCTTTGGTGCTGCAGTGGTATTCAACAAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGGCCATTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTTATTTTGAGAGCTGGAGCTGTTAAAGCGTTGGGATCTTTCAGGAGTACTCAAAGTGTTTGA 855 49.71 MAKDSDAGAFAAKDYHDPPPAPFIDPHEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYNSQSDIKHNGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNKSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTQSV* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15825011 15826120 - Chy8G154360.1 Chy08g00831 232617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00831 284 PANTHER AQUAPORIN PIP2-4-RELATED 6 281 - -
Chy08g00831 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Chy08g00831 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Chy08g00831 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 281 IPR034294 -
Chy08g00831 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 SUPERFAMILY Aquaporin-like 27 268 IPR023271 -
Chy08g00831 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00831 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02069 Chy08g00831 CCT
Chy04g02069 Chy08g00831 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00960 Chy-Chr3:13152706 Chy08g00831 Chy-Chr8:15825011 2.46E-149 dispersed
Chy08g00831 Chy-Chr8:15825011 Chy08g00833 Chy-Chr8:15840346 0 dispersed
Chy11g00301 Chy-Chr11:2752983 Chy08g00831 Chy-Chr8:15825011 1.92E-18 dispersed
Chy12g01348 Chy-Chr12:17763468 Chy08g00831 Chy-Chr8:15825011 3.53E-34 dispersed
Chy08g00828 Chy-Chr8:15814032 Chy08g00831 Chy-Chr8:15825011 1.08E-101 proximal
Chy08g00829 Chy-Chr8:15815299 Chy08g00831 Chy-Chr8:15825011 2.59E-39 proximal
Chy08g00831 Chy-Chr8:15825011 Chy08g00832 Chy-Chr8:15836718 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00831 K09872 - csv:101214884 568.926