Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00832 ATGCCGAAGGATATTGAAGCTGGAGCGCACGGTGGGTTCAGTGGAAAGGATTATGAAGACCCACCACCTGCGCCATTGATCGACCCACATGAGTTTGCTCAGTGGTCATTTTACAGAGCCATTATAGCCGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTTATTGGGTATAAAGTTCAGAGTGATGTTAAGAATGGAGGGGAGATTTGTGGCGGCGTTGGAATTTTGGGTATTGCTTGGGCCTTTGGTGGCATGATTTTTGTCCTTGTTTACTGCACCGCTGGGATTTCTGGGGGGCATATAAATCCGGCGGTGACTTTTGGGCTATTTTTGGCTCGTAAGGTGTCGTTAGTGAGAGCCATATTGTACATGGCGGCTCAGAGTTTAGGGGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACACTGAGTACGGTGGTGGAGCCAATTCCCTCGCCGACGGCTACAGCACGGGCACTGGATTAGCCGCTGAGATCATTGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCCCACGTCCCCGTTTTGGCGCCACTTCCGATTGGGTTCGCAGTGTTCATGGTTCATTTGGCCACGATTCCAATCACCGGAACAGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTTGTGTTCAACAAATCCAAGCCATGGGATGATCAATGGATTTTTTGGGTTGGACCTTTCATTGGAGCTGCCATAGCTGCAATTTATCATCAATTCATATTAAGAGCAGGAGCAGCAAAAGCTCTAGGATCATTCTCAAGTTCCTAA 855 48.19 MPKDIEAGAHGGFSGKDYEDPPPAPLIDPHEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDVKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQSLGAICGCALVKAFQNAHYTEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFSSS* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15836718 15837840 + Chy8G154370.1 Chy08g00832 232618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00832 284 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 1 283 - -
Chy08g00832 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Chy08g00832 284 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Chy08g00832 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 283 IPR034294 -
Chy08g00832 284 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Chy08g00832 284 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00832 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00832 Chy-Chr8:15836718 Chy11g00808 Chy-Chr11:11587712 4.54E-168 dispersed
Chy08g00831 Chy-Chr8:15825011 Chy08g00832 Chy-Chr8:15836718 0 tandem
Chy08g00832 Chy-Chr8:15836718 Chy08g00833 Chy-Chr8:15840346 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00832 K09872 - csv:101216085 560.066