Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00833 ATGTCTAAGGATCTTGAAGCTGGTGGATTCGCCGTCAAGGATTACCAAGACCCACCTCCAGCTCCATTGATCGATGCCGAAGAGTTAACTCAATGGTCTTTTTACAGAGCTATCATTGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACCGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACTAAAAACGGCGGCCAAATCTGTGGCGGCGTCGGCATTCTTGGCATTGCTTGGGCATTTGGTGGCATGATCTTTGTTCTCGTTTACTGCACTGCTGGAATTTCCGGTGGCCATATTAACCCAGCGGTGACTTTTGGGTTGTTCTTGGCGCGGAAAGTGTCTTTCATTAGAGCAATTCTTTACATGGTGGCTCAATGTTTGGGCGCCATTTGTGGCTGCGCTTTGGTGAAATCATTCCAGAAGGCTCTTTACAATGAGCACGGAGGTGGAGCCAATTCTCTCGCGGATGGGTACAGCACCGGCACCGGCTTAGCCGCGGAGATAATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACAGATCCCAAGAGAAATGCTAGAGATTCTCACGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCTATCACCGGCACCGGAATCAACCCAGCTCGAAGTTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCATGGGATGACCAGTGGATATTTTGGGTTGGACCGTTCATTGGAGCTGCGATTGCTGCAATTTATCACCAGGTTGTGTTGAGGGCAGGAGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCGACTGCCGTATGA 855 49.71 MSKDLEAGGFAVKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSFIRAILYMVAQCLGAICGCALVKSFQKALYNEHGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQVVLRAGAVKALGSFRSSTAV* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15840346 15841472 + Chy8G154380.1 Chy08g00833 232619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00833 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Chy08g00833 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Chy08g00833 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 2 281 - -
Chy08g00833 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00833 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 281 IPR034294 -
Chy08g00833 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00675 Chy-Chr1:4879412 Chy08g00833 Chy-Chr8:15840346 7.88E-156 dispersed
Chy04g02069 Chy-Chr4:26182920 Chy08g00833 Chy-Chr8:15840346 6.29E-159 dispersed
Chy08g00828 Chy-Chr8:15814032 Chy08g00833 Chy-Chr8:15840346 4.35E-102 dispersed
Chy08g00829 Chy-Chr8:15815299 Chy08g00833 Chy-Chr8:15840346 1.87E-40 dispersed
Chy08g00831 Chy-Chr8:15825011 Chy08g00833 Chy-Chr8:15840346 0 dispersed
Chy08g00833 Chy-Chr8:15840346 Chy11g00808 Chy-Chr11:11587712 4.40E-170 dispersed
Chy12g00291 Chy-Chr12:3189958 Chy08g00833 Chy-Chr8:15840346 1.85E-92 dispersed
Chy08g00832 Chy-Chr8:15836718 Chy08g00833 Chy-Chr8:15840346 0 tandem
Chy08g00833 Chy-Chr8:15840346 Chy08g00834 Chy-Chr8:15845458 5.73E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00833 K09872 - csv:101215366 553.132