Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00839 ATGATTACGTTTATGGATTCGAAAGAGAAACTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGAGTTTTCTATTTTCCACAAGGTCATGCTGAGCATTCTTGTGCGCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTTTGCAGAGTTTCTGCCATCAAGTTCCTTGCAGATCCTGACACTGATGAGGTATTTGCCAAACTTAGGTTGATTCCCATAAACGGAAGCGAACTAGATTTTGAAGATGATGGAATTGGAAGGCTTAATGGGTCCGAACAGGATAAACCAACCTCATTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGATTATTCTGCTGATCCACCTGTTCAAACCATTCTTGCTAAGGATGTTCATGGGGAGACATGGAAATTCAGGCACATTTATAGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAACCATAAGAAGCTCGTTGCAGGTGATTCCATTGTTTTCTTAAGGGCAGAAAACGGAGATCTCTGCGTTGGGATTAGACGGGCGAAGAGAGGAATTGGGGATGGACCGGAGTCATCCTGTGGATGGAATCCAGCAGGTGGTAACTGTGCTGTTTCGTATGGGGCATTCTCCGCGTTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTAAACTTGCTTCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCATTACAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAAGACTCTTCACGAATTAGTTGGTTCATGGGTACCATCAATTCGGTTCAGGTTGCCGACCCACTGCGCTGGCCTGAATCACCATGGAGGCTTCTTCAGGTAATCACTGTTATTTTCTCCCTGCCTGAATTCATTGCCAATAATCAATGTATTCTGAACATGATGATTCAGGACCGAATATATCACGTCCGCAGAAACATAGAAGTTTGTAAGTTCAGTGATTGTCTGGATGATTTGTAG 1251 44.92 MITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVSYGAFSAFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAAKLASNGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLRWPESPWRLLQVITVIFSLPEFIANNQCILNMMIQDRIYHVRRNIEVCKFSDCLDDL* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15901478 15902728 + Chy8G154440.1 Chy08g00839 232625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00839 416 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy08g00839 416 CDD B3_DNA 119 220 IPR003340 GO:0003677
Chy08g00839 416 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 372 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy08g00839 416 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
Chy08g00839 416 SMART B3_2 120 222 IPR003340 GO:0003677
Chy08g00839 416 Gene3D - 324 374 - -
Chy08g00839 416 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Chy08g00839 416 PANTHER AUXIN RESPONSE FACTOR 16 12 372 - -
Chy08g00839 416 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Chy08g00839 416 Gene3D - 118 222 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00839 Chy-Chr8:15901478 Chy11g00813 Chy-Chr11:11664482 0 dispersed
Chy11g01328 Chy-Chr11:19476458 Chy08g00839 Chy-Chr8:15901478 7.77E-64 wgd
Chy03g00953 Chy-Chr3:13093973 Chy08g00839 Chy-Chr8:15901478 1.36E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18424 PF02362 B3 6.60E-22 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00839 - - csv:101217039 761.911