Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00844 ATGGCGGAATTTGGTCACCAAAATGGCGTCGAGTTTTGCATCAGCGGCCGTAATAACATCAATAACGATCCGTTGAATTGGGGAGCGGCAGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTAGAGGAGTACCGGCGGCCGGTGGTGAAACTTGGAGGAGAGACTCTGACGATATCTCAGGTGGCTGCGATCGCCTCCAGGGATTCCGGCGTGGTGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGGGTTGAGGCGAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGAACGGATAGCTACGGCGTCACCACCGGCTTTGGTGCCACCTCCCATCGCCGGACTAAAGAGGGCGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATGCGGGAGTATTTGGAAATGGCCCTGAATCGAGTCACACTTTACCTCATTCAGCAACAAGAGCAGCCATGTTAGTCAGGATCAACACCCTTCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCTATAACCAAACTTCTCAACCACAATGTCACTCCATGTTTGCCTCTTCGAGGAACTATTACTGCTTCGGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTACTTACTGGTCGATCGAATTCGAAGGCTATTGGCCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCAAACAAGCCAGTATTCCCTCTGGGTTCTTTGAGTTGCAACCTAAAGAAGGGTTGGCTCTTGTCAATGGAACTGCTGTTGGTTCAGGGTTAGCTTCTATTGTGCTATTTGAGGCAAACATTTTGGCAGTTTTAGCTGAAATTATGTCTGCTATTTTTGCTGAGGTCATGCAAGGTAAGCCTGAATTTACCGATCATTTGACTCATAAATTGAAGCATCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTTTAGATGGAAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCTAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTGTATTGAGAGGGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAAGCTTTACACGGAGGTAACTTCCAAGGAACACCAATTGGAGTCTCGATGGACAACACTCGCCTGGTCATTGCTTCAATTGGTAAGCTCATCTTTGCTCAATTTTCTGAGCTTGTTAATGATTTTTACAACAATGGCTTGCCTTCAAATCTCTCTGCAAGTAGAAGCCCAAGCTTAGATTATGGACTCAAAGGTACCGAAATTGCTATGGCTTCTTATTGCTCCGAGCTTCAATATTTGGCAAATCCAGTAACAAGTCATGTCCAAAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTAGCACTTTGTCAAGCAATTGACTTGAGGCATTTAGAAGAAAATCTAAAGAGCACAGTAAAGAATACAGTGAGCCAAGTGGCCAAGAAGATCCTTACCATTGGTGCTAATGGAGCTCTTCACCCATCTAGATTTTGTGAGAAGGATTTACTCAAGGTTGTTGATAGAGAATACACGTTTTCTTACATCGATGACCCATGCAGTGCCACTTATCCATTAATGCAAAAGTTAAGACAAGTTCTTGTGGAGCATGCACTTTCAAATGGAGAAGATGAGAAGAACACCAATAGTTCAATCTTTCAAAAGATTCATGTTTTCGAAGAGGAACTAAAAGTTGTTTTACCTAAGGAGGTAGAAACTGCAAGGTTTGCTTATGAAAATGGGAACTCTATAGTTCAAAATCAAATTAAGAAATGTCGATCATATCCACTCTACAAGTTCATAAGAAAAGAGTTAGGAACTGAGTTGCTTACAGGAGAGAAGGCAAAATCTCCAGGAGAAGTGTGCCAAAAAGTGTTCACAGCTTTATGTCAAGGAAAGATGATCGATCCGATCTTAGAGTGTTTAAAGGAATGGAATGGCGCTCCAATTCCTATTTGCTAA 2145 43.31 MAEFGHQNGVEFCISGRNNINNDPLNWGAAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIASRDSGVVVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGVFGNGPESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRSNSKAIGPNGESLDAKEAFKQASIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEIMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKCIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLVIASIGKLIFAQFSELVNDFYNNGLPSNLSASRSPSLDYGLKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKILTIGANGALHPSRFCEKDLLKVVDREYTFSYIDDPCSATYPLMQKLRQVLVEHALSNGEDEKNTNSSIFQKIHVFEEELKVVLPKEVETARFAYENGNSIVQNQIKKCRSYPLYKFIRKELGTELLTGEKAKSPGEVCQKVFTALCQGKMIDPILECLKEWNGAPIPIC* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15943078 15946160 + Chy8G154490.1 Chy08g00844 232630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00844 714 Gene3D - 14 260 IPR024083 -
Chy08g00844 714 Pfam Aromatic amino acid lyase 61 536 IPR001106 -
Chy08g00844 714 Gene3D - 527 648 IPR023144 -
Chy08g00844 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Chy08g00844 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Chy08g00844 714 PANTHER HISTIDINE AMMONIA-LYASE 18 714 IPR001106 -
Chy08g00844 714 CDD PAL-HAL 59 524 IPR001106 -
Chy08g00844 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Chy08g00844 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 714 - -
Chy08g00844 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00844 Chy-Chr8:15943078 Chy08g00846 Chy-Chr8:15963416 0 dispersed
Chy08g00844 Chy-Chr8:15943078 Chy08g00845 Chy-Chr8:15959396 0 tandem
Chy11g00821 Chy-Chr11:11759326 Chy08g00844 Chy-Chr8:15943078 0 wgd
Chy03g00945 Chy-Chr3:13011403 Chy08g00844 Chy-Chr8:15943078 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00844 K10775 - csv:101217907 1373.61