Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00845 ATGGCACCCATTGATCAGACAAATGACGACAGCAGCTTTTGCACCATTACTACTCATCCAGACCCACTCAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGTCCATGGTCGAGGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAGGTGGCTGCTATTGCTACTCGGGATACTGATGTTATTGTTGAGCTTTCTGAATCTGCTAGAGCTGGTGTTAAGGCTAGCAGTGATTGGGTTATGGAGAGTATGAATAAAGGGACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACTTCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAGTCTGATCATACTTTGCCCCATTCAGCTACGAGAGCGGCCATGTTGGTGAGAATCAACACTCTACTTCAAGGCTACTCAGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACAATAATATCACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGTCCAAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAAGCTTTCCAACAAGCTGGTATTCCATCTGGGTTTTTTGAGTTGCAGCCAAAGGAAGGGTTGGCACTTGTTAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTGTTGTCTGAGATTTTGTCTGCCATCTTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGATCATTTGACCCATAAGTTGAAGCATCATCCAGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAACGGCTAAGAAGTTGCATGAAATGGATCCTCTTCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACATGGGGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTAGCTATTGCTTCAATTGGAAAACTCCTTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTATAATAATGGGTTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCTATGGCTTCATATTGCTCTGAGCTCCAATACCTAGCAAATCCTGTAACTAGTCATGTCCAAAGTGCCGAGCAACACAATCAAGATGTGAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCTGAGGCAATTGACATTTTGAAGCTCATGTCTTCCACATTTCTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATCTAGAAGAGAACTTGAAACACACCGTTAAAAATACAGTAAGTCAAGTGGTGAAGAAAGTCCTCACCACTAGCTCAAATGGCACACTCCATCCATCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGGGAATACACATTTGCTTATATTGACGATCCATGCAGTGCTACTTATCCATTGATGCAAAAGTTAAGGCAAGTTATTGTCGAACATGCTTTAAACAATGGAGAGGGTGAAAAAGAACTAGCTACTTCAATCTTTCAAAAAATTGGAACATTTGAAGAGGAACTGAAGGCTGTTCTACCAAAAGAAGTGGAAAACGTAAGATTGGCCTACGAAAATGGAGATGCTACTATTGAGAATCAAATTAAGGAATGCAGATCTTATCCATTATATAAGTTTGTAAGAAAAGAGTTGGGCACTAATTTGCTAACTGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGCGAAAAAGTTTTTACTGCGTTGTGTCAAGGAAAGATGATCGATCCAATTTTGGAATGTTTGAAGGAATGGAATGGCGCTCCAATTCCTATATGCTAA 2139 41.47 MAPIDQTNDDSSFCTITTHPDPLNWGLAADSLKGSHLDEVKSMVEEYRRPLVKLGGETLTISQVAAIATRDTDVIVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVVKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEGEKELATSIFQKIGTFEEELKAVLPKEVENVRLAYENGDATIENQIKECRSYPLYKFVRKELGTNLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15959396 15961534 + Chy8G154500.1 Chy08g00845 232631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00845 712 Gene3D - 525 646 IPR023144 -
Chy08g00845 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 712 - -
Chy08g00845 712 Gene3D - 13 258 IPR024083 -
Chy08g00845 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Chy08g00845 712 CDD PAL-HAL 57 522 IPR001106 -
Chy08g00845 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Chy08g00845 712 Pfam Aromatic amino acid lyase 59 532 IPR001106 -
Chy08g00845 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Chy08g00845 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Chy08g00845 712 PANTHER HISTIDINE AMMONIA-LYASE 17 712 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01254 Chy-Chr2:9163776 Chy08g00845 Chy-Chr8:15959396 0 dispersed
Chy03g00945 Chy-Chr3:13011403 Chy08g00845 Chy-Chr8:15959396 0 dispersed
Chy07g01540 Chy-Chr7:19659490 Chy08g00845 Chy-Chr8:15959396 0 dispersed
Chy07g01541 Chy-Chr7:19661848 Chy08g00845 Chy-Chr8:15959396 0 dispersed
Chy08g00845 Chy-Chr8:15959396 Chy08g00848 Chy-Chr8:15971588 0 dispersed
Chy08g00844 Chy-Chr8:15943078 Chy08g00845 Chy-Chr8:15959396 0 tandem
Chy08g00845 Chy-Chr8:15959396 Chy08g00846 Chy-Chr8:15963416 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00845 K10775 - csv:101218144 1354.73