Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00873 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCCGCTTGCCGCTCCGTGCCGGTGCCACCACCGCCGCCGCTCTCAACCTCACTCTCCCTGGCCAGCATCCTAGCCCTGAATTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCGGAGAAAGATGCATCTTCTTCTTGCTACACCGGGAATCCCATCGACGACTGCTGGAAATGCGACCGAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGTGGCAAGAACGGCGAGTTCTACATAGTCACGGACGATTCCGACGACGATGCAGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTGTGGATCGTCTTTCCTGCCAATATGCTCATCAAACTCTCACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACGTTGCAATACATAAGTAATGTCATCATCCACAACATCCATATCCACCATTGTCATCCATCAGGTAACACCATGGTTCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGACATATGGATTGATCATTGTTCATTGTCTCATTGCAAAGATGGATTGATCGATGCGGTGATGGGATCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGTTGTTGGGTCACAGCGACAACTACTGGCCGGATTCCGGTATGCAGGTAACAATAGCATTCAACCACTTCGGAGAAAAGCTAGTGCAAAGGATGCCACGCTGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGCAACCCCACCATCAACAGCCAAGGCAACCGTTACACGGCCCCATATGACCGCAACGCCAAGGAGGTCACCAAGCGAGTCGAAACTTCCGAATCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGAGACATCCTTGTGAACGGCGCCTTCTTCGTCACTTCCGGTCAAGGGCTTGAAGTGAAGTACGAGAAGGCTTACAGCGTCGAGCCGAAGTCCGCGGCGCTGATTGATCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGATAATAATTTGGGGATGTGGACGACTGGCCCTAATGGTAATGGCGGTGGGTTTGGGCTTGGGTTTGGTATGGACTATACTGACGACATGTCGGAGAGTTGTTTTGTAAGGGTGTTTTCTGTTTTGTTGTGGTCTTTTTGTTGGGCATTGGTCGTGGTTGTTGCGTTTGTGCTATGA 1443 52.67 MLATTCIVLLALLLPSRLPLRAGATTAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDASSSCYTGNPIDDCWKCDRNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDNYWPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGNGGGFGLGFGMDYTDDMSESCFVRVFSVLLWSFCWALVVVVAFVL* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16159387 16162006 + Chy8G154780.1 Chy08g00873 232659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00873 480 Pfam Pectate lyase 161 340 IPR002022 -
Chy08g00873 480 PANTHER PECTATE LYASE 12-RELATED 5 437 - -
Chy08g00873 480 Gene3D - 76 418 IPR012334 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 99 116 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 367 391 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 159 175 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 396 419 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 223 244 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Chy08g00873 480 PRINTS Pollen allergen Amb family signature 123 148 IPR018082 -
Chy08g00873 480 PANTHER PECTATE LYASE 18-RELATED 5 437 IPR045032 GO:0030570
Chy08g00873 480 SUPERFAMILY Pectin lyase-like 70 399 IPR011050 -
Chy08g00873 480 SMART amb_all 151 348 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00873 Chy-Chr8:16159387 Chy10g01285 Chy-Chr10:17374876 0 dispersed
Chy08g00873 Chy-Chr8:16159387 Chy06g00395 Chy-Chr6:2675533 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00873 K01728 - csv:101203012 924.85