Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00880 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACTCATCCAGATGCTTTGAAGGCTGGATTGGCTGAGTTTATCTCCACCTTGATTTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTTAGTAAGCTCACCAATGACGGCGCTACCACTCCAGCTGGTCTCATCTCCGCCTCCATCGCCCATGCCTTTGCTCTTTTCGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTTAACCCCGCCGTTACCTTCGGTGCCTTCGTTGGCGGTAACATCACCCTTCTACGTGGTATCATCTACTGGATTGCTCAACTCCTCGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTTGTCACTGGCTTGCCCACCGGAAGCTTCGCTCTATCATCAGGAGTTGGTGAACTAAACGCCTTCGTTTTCGAGATCGTCATGACATTCGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCCAACATTTTGGCCGGTGGAGCATTCACCGGAGCCTCCATGAACCCCGCCGTCGCATTCGGCCCATCAGTCATGTCAATTCACCAAAATTCCTTATTTTCAATGAGCTATAGAGGCTTACAAAAAGATGAAGTGAATTACGAGAATAGTCGTTATCTCTTAATTAGGAAGTTGAAGCATGTGCGATCCACTCCTAGTTTTTAA 753 49.8 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTNDGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSSGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVMSIHQNSLFSMSYRGLQKDEVNYENSRYLLIRKLKHVRSTPSF* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16189217 16197617 - Chy8G154850.1 Chy08g00880 232666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00880 250 SUPERFAMILY Aquaporin-like 13 213 IPR023271 -
Chy08g00880 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 PANTHER AQUAPORIN TIP1-1 1 214 - -
Chy08g00880 250 CDD MIP 21 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Chy08g00880 250 Pfam Major intrinsic protein 14 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy08g00880 250 PANTHER AQUAPORIN-8 1 214 IPR034294 -
Chy08g00880 250 Gene3D Glycerol uptake facilitator protein. 4 233 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02024 Chy08g00880 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00880 Chy-Chr8:16189217 Chy09g00756 Chy-Chr9:10013912 8.07E-100 dispersed
Chy04g02024 Chy-Chr4:25910361 Chy08g00880 Chy-Chr8:16189217 4.92E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00880 K09873 - csv:101204225 400.208