Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00885 ATGCAAAGGGTATGGGGATTTTTGGTGATTATGTTGTGGCTAAGTATAATTGGGGATGCAACAAATGTAGGAGCCACATTGAAACGTGCAAAACGGCATAGGCAATTAGGAGAAGGGGCGACGATTATTAAACAGCATCGTAGGCCGCCGTTTAAGCCCGGCACTTGGAACCACGCTCATGCTACCTTCTATGAAGGTGGCTCCGGAACTTTTGGTGCTGCGTGTGGGTACGAAGACGTGGAAAAGGAAGGGTATGGGATGCAGACGGCGGCGCTGAGCACGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTATGAAATAAAATGCGTGGACGATCCCCAATGGTGCAAGCCCGGGCAGCCTTCCCTAGTGGTGACGGGTACCAACCACTGTCCGCCCAATCACAACCTTCCTAATGACAACGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCCAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGTCGGGCATTGTCCCTATCACTTACCGCAGTAAGCTCAAATGGACGTCCATGTCTCGTTCGTGGGGTCAAAAATGGATCACCAACGCCATGCTGGTTGGCGAGTCCCTCACCTTTAAGGTTCGAGCCAGTGATGGCAGATTCTCCACTTCATGGCACGTTGCTCCCCCAACTTGGCAGTTTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTGCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGATGAAGAAGAGCGTTGAGACCTACAAGATTTACCTCTTCAAGGTCTTGAAGCAGGTCCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGACTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCGGTTACCAAATTCACCAGTTCTTAG 1089 50.87 MQRVWGFLVIMLWLSIIGDATNVGATLKRAKRHRQLGEGATIIKQHRRPPFKPGTWNHAHATFYEGGSGTFGAACGYEDVEKEGYGMQTAALSTALFNNGQSCGACYEIKCVDDPQWCKPGQPSLVVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKSGIVPITYRSKLKWTSMSRSWGQKWITNAMLVGESLTFKVRASDGRFSTSWHVAPPTWQFEKKPAEKKPAEKAPAGEKKPRAEKKIAKDASSSDKKKKRMKKSVETYKIYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16259905 16264919 + Chy8G154900.1 Chy08g00885 232671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00885 362 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 228 IPR007117 -
Chy08g00885 362 Pfam Lytic transglycolase 89 176 IPR009009 -
Chy08g00885 362 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 177 IPR007112 -
Chy08g00885 362 Pfam Core histone H2A/H2B/H3/H4 231 338 IPR007125 GO:0003677
Chy08g00885 362 SUPERFAMILY PHL pollen allergen 176 229 IPR036749 -
Chy08g00885 362 MobiDBLite consensus disorder prediction 229 267 - -
Chy08g00885 362 MobiDBLite consensus disorder prediction 226 267 - -
Chy08g00885 362 SUPERFAMILY Barwin-like endoglucanases 55 178 IPR036908 -
Chy08g00885 362 PRINTS Histone H2B signature 316 333 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 PRINTS Histone H2B signature 294 314 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 PRINTS Histone H2B signature 275 293 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 PRINTS Histone H2B signature 346 359 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 PRINTS Histone H2B signature 333 346 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 SMART dpbb_1 89 176 IPR007112 -
Chy08g00885 362 Gene3D Histone, subunit A 230 362 IPR009072 GO:0046982
Chy08g00885 362 Pfam Expansin C-terminal domain 179 223 IPR007117 -
Chy08g00885 362 SMART h2b3 265 361 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 ProSitePatterns Histone H2B signature. 330 352 IPR000558 GO:0000786|GO:0003677|GO:0030527
Chy08g00885 362 Gene3D - 40 179 IPR036908 -
Chy08g00885 362 PANTHER EXPANSIN-A32 37 177 - -
Chy08g00885 362 PANTHER EXPANSIN-A32 179 230 - -
Chy08g00885 362 PANTHER EXPANSIN-A15 37 177 IPR002963 GO:0009664
Chy08g00885 362 PANTHER EXPANSIN-A15 179 230 IPR002963 GO:0009664
Chy08g00885 362 SUPERFAMILY Histone-fold 248 362 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00885 Chy-Chr8:16259905 Chy11g01222 Chy-Chr11:18396907 2.90E-77 dispersed
Chy12g00762 Chy-Chr12:11733277 Chy08g00885 Chy-Chr8:16259905 3.07E-68 dispersed
Chy12g00765 Chy-Chr12:11753164 Chy08g00885 Chy-Chr8:16259905 1.71E-64 dispersed
Chy08g00885 Chy-Chr8:16259905 Chy10g00538 Chy-Chr10:11972620 1.39E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00885 - - csv:101204720 469.544