Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy08g00891 ATGCGCCTCTTTTTCTGCTTCATCTATGCGTTAGCCTCCGTCGTCGCCCTCACCCTCGCCGGCACGGCGGCTATCTCCCCCGGCCCCAACCATTTCCTTCTCCACAGAGCCTTCCCTCACTTTCCCTCTCCCCACTTTCACTCCCTCAAAGCTCGCGACCGCCTCCGCCATTCCCGCCTCTTGCGACGACTCGCCGGTGGCATCGTCAATTTCTCCGTTAAAGGCTCCTCCAATCCTTTCGTCGGGCTTTATTTCACCAAAGTGAAGTTGGGAAATCCTGAGAGGGAATTCAATGTGCAGATCGATACTGGGAGTGACATTTTGTGGGTCACTTGCAGTCCTTGCGATGGCTGTCCTGATTCGAGCGGACTTGGAATTGAGCTCAACTTATTTGATACTACAAAGTCGTCCTCTGCTAGGGTTCTTCCCTGCACAGATCCAATATGTGCAGCAGTTTCGACTACTACAGATCAATGCTTAACCCAGACTGACCATTGCAGTTACTCCTTCCACTATCGGGATAGAAGTGGAACGTCCGGCTTTTATGTTACTGATTCGATGCATTTTGACATTCTTCTGGGGGAGTCAACTATTGCAAATTCATCAGCAACTATTGTTTTTGGGTGCAGCATATATCAGTATGGGGATTTGACTCGGGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCAAGGGGAGTTCTCAGTTATTTCACAATTATCTTCTCGAGGGATAACACCTAAAGTATTCTCCCATTGTTTGAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGACGCACTATACATTAAATTTACAGAGTATTGCACTCAGTGGGCAACTGTTTCCAAACCCCACCATGTTTCCTATATCAAATGCAGGAGAAACTATTATCGACTCCGGGACAACTTTGGCATACCTTGTCGAAGAAGTTTATGATTGGATTGTCAGTGTGATAACTGCTGCTGTTTCTCAATCAGCCACTCCAACAATTTCGATGGGTAGCCAATGCTTCAGAGTCTCTACGAGCGTAGCAGACATATTTCCTGTCCTCAGGTTTAATTTTGAGGGCATTGCATCCATGGTGGTGACTCCTGAAGAATATCTTCAGTTTGACTCCATAGAACCAGCTTTATGGTGCATAGGTTTTCAGAAAGCTGAGGATGGATTGAACATTTTAGGAGATCTTGTTTTGAAAGATAAAATCATTGTCTATGACTTAGCACGACAACGGATTGGATGGGCGAATTATGACTGTTCGTCGTCCGTAAATGTTTCTGTAACATCTGGAAAGGATGTTTTCATCAATGAAGGACAGCTGAGTGTAAGCAGCTCCTCAAGGAAGCATTTCTATCAGCTGCTCAACATTGTCATTGAGATGCACACATTGGTAAGTATATCCCCAAGTTGCACCAAGCATTACTCTCAAACCGCTACGGGGGTTCCTGAGGTTTCGTGGAAGGACTTGCAGTACCCGGCAGGGATGCTCGGGGCCATTCCCAACGGCCGGAAGTTATTGATGAAAGAAGGCAAATGGAGTATTTGA 1602 46.25 MRLFFCFIYALASVVALTLAGTAAISPGPNHFLLHRAFPHFPSPHFHSLKARDRLRHSRLLRRLAGGIVNFSVKGSSNPFVGLYFTKVKLGNPEREFNVQIDTGSDILWVTCSPCDGCPDSSGLGIELNLFDTTKSSSARVLPCTDPICAAVSTTTDQCLTQTDHCSYSFHYRDRSGTSGFYVTDSMHFDILLGESTIANSSATIVFGCSIYQYGDLTRATKALDGIFGFGQGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQTHYTLNLQSIALSGQLFPNPTMFPISNAGETIIDSGTTLAYLVEEVYDWIVSVITAAVSQSATPTISMGSQCFRVSTSVADIFPVLRFNFEGIASMVVTPEEYLQFDSIEPALWCIGFQKAEDGLNILGDLVLKDKIIVYDLARQRIGWANYDCSSSVNVSVTSGKDVFINEGQLSVSSSSRKHFYQLLNIVIEMHTLVSISPSCTKHYSQTATGVPEVSWKDLQYPAGMLGAIPNGRKLLMKEGKWSI* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16326256 16337249 + Chy8G154960.1 Chy08g00891 232677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy08g00891 533 Pfam Xylanase inhibitor C-terminal 286 434 IPR032799 -
Chy08g00891 533 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Chy08g00891 533 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Chy08g00891 533 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Chy08g00891 533 Gene3D Acid Proteases 270 445 IPR021109 -
Chy08g00891 533 PANTHER ASPARTYL PROTEASES 8 457 IPR001461 GO:0004190|GO:0006508
Chy08g00891 533 ProSiteProfiles Peptidase family A1 domain profile. 84 434 IPR033121 -
Chy08g00891 533 SUPERFAMILY Acid proteases 79 442 IPR021109 -
Chy08g00891 533 Gene3D Acid Proteases 68 269 IPR021109 -
Chy08g00891 533 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 457 - -
Chy08g00891 533 CDD pepsin_A_like_plant 84 438 IPR034161 -
Chy08g00891 533 Pfam Xylanase inhibitor N-terminal 84 268 IPR032861 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00891 Chy-Chr8:16326256 Chy11g00208 Chy-Chr11:1963460 1.72E-35 dispersed
Chy03g00785 Chy-Chr3:10691143 Chy08g00891 Chy-Chr8:16326256 1.37E-24 transposed
Chy07g00625 Chy-Chr7:5791190 Chy08g00891 Chy-Chr8:16326256 2.56E-19 transposed
Chy11g00008 Chy-Chr11:131438 Chy08g00891 Chy-Chr8:16326256 4.52E-32 transposed
Chy11g00863 Chy-Chr11:12073042 Chy08g00891 Chy-Chr8:16326256 1.81E-160 wgd
Chy04g01999 Chy-Chr4:25794776 Chy08g00891 Chy-Chr8:16326256 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy08g00891 - - csv:101205203 918.302